FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038788 through 18771 annotations produced 1 hits

Sirt2 (Sirt2):

Annotation Number : CG5085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038788
Gbrowse : chr3R:16154191-16155753 (+) // 100.0 //
Probeset : 1626458_at
Accessions : protein= NP_650880;, nucleotide= NM_142623;
Interpro : "0008270 // zinc ion binding // inferred from electronic annotation /// 0016811 // hydrolase activity
FlyMine data for FBgn0038788.
BDGP gene expression has embryonic in situ data for CG5085: 11 pix of staining in 9 body parts.
BioGrid reports that CG5085 interacts with CG9271 CG9046 CG15006 CG17508 CG31204 CG5708 CG11182 CG13510 CG2944 CG14816 CG32139 CG5473 CG31000 CG5650 CG5731 CG15218 CG31679 CG2865 CG12723 CG31811 CG8667 CG9930 CG4184 CG13900 .
TRiP has 3 RNAi stocks for FBgn0038788 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038788 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	210 ± 3	4 of 4	1.60	Up
Head	151 ± 5	4 of 4	1.20	None
Eye	330 ± 12	4 of 4	2.56	Up
Thoracicoabdominal ganglion	307 ± 9	4 of 4	2.40	Up
Salivary gland	144 ± 4	4 of 4	1.12	None
Crop	129 ± 4	4 of 4	1.00	None
Midgut	112 ± 4	4 of 4	0.90	None
Tubule	109 ± 6	4 of 4	0.80	Down
Hindgut	108 ± 1	4 of 4	0.80	None
Heart	112 ± 4	4 of 4	0.88	None
Fat body	105 ± 6	4 of 4	0.82	None
Ovary	201 ± 3	4 of 4	1.60	Up
Testis	550 ± 13	4 of 4	4.30	Up
Male accessory glands	139 ± 9	4 of 4	1.10	None
Virgin spermatheca	95 ± 6	4 of 4	0.74	None
Mated spermatheca	99 ± 4	4 of 4	0.77	None
Adult carcass	125 ± 5	4 of 4	1.00	None
Larval CNS	132 ± 5	4 of 4	1.03	None
Larval Salivary gland	141 ± 9	4 of 4	1.10	None
Larval midgut	102 ± 2	4 of 4	0.79	None
Larval tubule	109 ± 1	4 of 4	0.90	None
Larval hindgut	102 ± 3	4 of 4	0.80	None
Larval fat body	156 ± 42	4 of 4	1.20	None
Larval trachea	79 ± 7	4 of 4	0.62	Down
Larval carcass	86 ± 3	4 of 4	0.67	Down
S2 cells (growing)	160 ± 1	4 of 4	1.25	None
Whole fly	128 ± 12	4 of 4

Looking for FBgn0038788. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720