FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038789 through 18771 annotations produced 2 hits

CG15685 (Ir92a):

Annotation Number : CG15685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038789
Gbrowse : chr3R:16165875-16169624 (+) // 100.0 //
Probeset : 1638542_at
Accessions : protein= NP_001097845;, nucleotide= NM_001104375;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005234 // extracellular-gl
FlyMine data for FBgn0038789.
BioGrid reports that CG15685 interacts with CG15753 CG5026 .
VDRC has 2 RNAi stocks for FBgn0038789 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.50	None
Head	3 ± 2	1 of 4	1.20	None
Eye	2 ± 0	0 of 4	0.90	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.90	None
Salivary gland	4 ± 1	0 of 4	1.28	None
Crop	4 ± 2	1 of 4	1.50	None
Midgut	4 ± 1	1 of 4	1.50	None
Tubule	3 ± 1	0 of 4	1.20	None
Hindgut	5 ± 1	0 of 4	1.70	None
Heart	0 ± 0	0 of 4	0.21	None
Fat body	4 ± 1	1 of 4	1.35	None
Ovary	2 ± 0	1 of 4	0.80	None
Testis	1 ± 0	0 of 4	0.50	None
Male accessory glands	3 ± 1	0 of 4	0.90	None
Virgin spermatheca	1 ± 0	0 of 4	0.55	None
Mated spermatheca	3 ± 1	0 of 4	1.13	None
Adult carcass	5 ± 1	0 of 4	1.60	None
Larval CNS	2 ± 1	0 of 4	0.71	None
Larval Salivary gland	1 ± 0	0 of 4	0.57	None
Larval midgut	4 ± 1	0 of 4	1.29	None
Larval tubule	4 ± 1	1 of 4	1.40	None
Larval hindgut	3 ± 0	0 of 4	1.13	None
Larval fat body	3 ± 1	0 of 4	1.00	None
Larval trachea	3 ± 1	0 of 4	0.96	None
Larval carcass	1 ± 0	0 of 4	0.44	None
S2 cells (growing)	11 ± 1	4 of 4	3.78	Up
Whole fly	3 ± 1	0 of 4

CG15685 (Ir92a):

Annotation Number : S.C3R002163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038789
Gbrowse : chr3R:16162826-16165224 (+) // 100.0 //
Probeset : 1630107_at
Accessions : protein= NP_001097845;, nucleotide= NM_001104375;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005234 // extracellular-gl
FlyMine data for FBgn0038789.
VDRC has 2 RNAi stocks for FBgn0038789 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.70	None
Head	2 ± 0	0 of 4	1.80	None
Eye	2 ± 1	1 of 4	2.57	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	2.60	None
Salivary gland	3 ± 1	0 of 4	3.24	None
Crop	2 ± 1	0 of 4	2.50	None
Midgut	1 ± 0	0 of 4	1.30	None
Tubule	3 ± 0	0 of 4	2.70	Up
Hindgut	1 ± 0	0 of 4	1.30	None
Heart	0 ± 0	0 of 4	0.37	None
Fat body	1 ± 1	0 of 4	1.15	None
Ovary	1 ± 0	0 of 4	1.00	None
Testis	0 ± 0	0 of 4	0.40	None
Male accessory glands	2 ± 0	0 of 4	1.80	None
Virgin spermatheca	1 ± 0	0 of 4	0.98	None
Mated spermatheca	2 ± 0	0 of 4	1.76	None
Adult carcass	1 ± 0	0 of 4	1.10	None
Larval CNS	1 ± 1	0 of 4	1.37	None
Larval Salivary gland	2 ± 1	0 of 4	1.93	None
Larval midgut	1 ± 0	0 of 4	1.24	None
Larval tubule	1 ± 0	0 of 4	1.00	None
Larval hindgut	1 ± 0	0 of 4	0.83	None
Larval fat body	2 ± 1	0 of 4	2.50	None
Larval trachea	2 ± 2	0 of 4	2.02	None
Larval carcass	2 ± 0	0 of 4	1.74	None
S2 cells (growing)	6 ± 1	1 of 4	5.57	Up
Whole fly	1 ± 0	0 of 4

Looking for FBgn0038789. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720