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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038789 through 18771 annotations produced 2 hits



CG15685 (Ir92a):

Annotation Number : CG15685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038789
Gbrowse : chr3R:16165875-16169624 (+) // 100.0 //
Probeset : 1638542_at
Accessions : protein= NP_001097845;, nucleotide= NM_001104375;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005234 // extracellular-gl
FlyMine data for FBgn0038789.
BioGrid reports that CG15685 interacts with CG15753 CG5026 .
VDRC has 2 RNAi stocks for FBgn0038789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.50None
Head3 21 of 4 1.20None
Eye2 00 of 4 0.90None
Thoracicoabdominal ganglion2 10 of 4 0.90None
Salivary gland4 10 of 4 1.28None
Crop4 21 of 4 1.50None
Midgut4 11 of 4 1.50None
Tubule3 10 of 4 1.20None
Hindgut5 10 of 4 1.70None
Heart0 00 of 4 0.21None
Fat body4 11 of 4 1.35None
Ovary2 01 of 4 0.80None
Testis1 00 of 4 0.50None
Male accessory glands3 10 of 4 0.90None
Virgin spermatheca1 00 of 4 0.55None
Mated spermatheca3 10 of 4 1.13None
Adult carcass5 10 of 4 1.60None
Larval CNS2 10 of 4 0.71None
Larval Salivary gland1 00 of 4 0.57None
Larval midgut4 10 of 4 1.29None
Larval tubule4 11 of 4 1.40None
Larval hindgut3 00 of 4 1.13None
Larval fat body3 10 of 4 1.00None
Larval trachea3 10 of 4 0.96None
Larval carcass1 00 of 4 0.44None
S2 cells (growing)11 14 of 4 3.78Up
Whole fly3 10 of 4



CG15685 (Ir92a):

Annotation Number : S.C3R002163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038789
Gbrowse : chr3R:16162826-16165224 (+) // 100.0 //
Probeset : 1630107_at
Accessions : protein= NP_001097845;, nucleotide= NM_001104375;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005234 // extracellular-gl
FlyMine data for FBgn0038789.
VDRC has 2 RNAi stocks for FBgn0038789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.70None
Head2 00 of 4 1.80None
Eye2 11 of 4 2.57None
Thoracicoabdominal ganglion3 10 of 4 2.60None
Salivary gland3 10 of 4 3.24None
Crop2 10 of 4 2.50None
Midgut1 00 of 4 1.30None
Tubule3 00 of 4 2.70Up
Hindgut1 00 of 4 1.30None
Heart0 00 of 4 0.37None
Fat body1 10 of 4 1.15None
Ovary1 00 of 4 1.00None
Testis0 00 of 4 0.40None
Male accessory glands2 00 of 4 1.80None
Virgin spermatheca1 00 of 4 0.98None
Mated spermatheca2 00 of 4 1.76None
Adult carcass1 00 of 4 1.10None
Larval CNS1 10 of 4 1.37None
Larval Salivary gland2 10 of 4 1.93None
Larval midgut1 00 of 4 1.24None
Larval tubule1 00 of 4 1.00None
Larval hindgut1 00 of 4 0.83None
Larval fat body2 10 of 4 2.50None
Larval trachea2 20 of 4 2.02None
Larval carcass2 00 of 4 1.74None
S2 cells (growing)6 11 of 4 5.57Up
Whole fly1 00 of 4

Looking for FBgn0038789. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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