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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038803 through 18771 annotations produced 1 hits



(CG5191):

Annotation Number : CG5191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038803
Gbrowse : chr3R:16386581-16398636 (+) // 100.0 //
Probeset : 1636244_s_at
Accessions : protein= NP_650893; /// NP_732523; /// NP_732524; /// NP_732525; /// NP_732526;, nucleotide= NM_142636; /// NM_169902; /// NM_169903; /// NM_169904; /// NM_169905;
Interpro : "0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity
FlyMine data for FBgn0038803.
Homophila reports that CG5191 is a close match (8e-12) to human gene FAAH (NP_001432), a gene associated with {Drug addiction, susceptibility to} (3).
BioGrid reports that CG5191 interacts with CG7021 CG7191 .
VDRC has 2 RNAi stocks for FBgn0038803 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain635 ± 54 of 4 1.30Up
Head911 ± 544 of 4 1.80Up
Eye1406 ± 774 of 4 2.80Up
Thoracicoabdominal ganglion765 ± 154 of 4 1.50Up
Salivary gland382 ± 144 of 4 0.76Down
Crop4215 ± 1724 of 4 8.40Up
Midgut221 ± 74 of 4 0.40Down
Tubule228 ± 184 of 4 0.50Down
Hindgut2352 ± 424 of 4 4.70Up
Heart208 ± 164 of 4 0.42Down
Fat body320 ± 424 of 4 0.64Down
Ovary567 ± 94 of 4 1.10None
Testis168 ± 44 of 4 0.30Down
Male accessory glands204 ± 84 of 4 0.40Down
Virgin spermatheca568 ± 124 of 4 1.13None
Mated spermatheca516 ± 264 of 4 1.03None
Adult carcass443 ± 94 of 4 0.90None
Larval CNS271 ± 184 of 4 0.54Down
Larval Salivary gland134 ± 34 of 4 0.27Down
Larval midgut148 ± 184 of 4 0.29Down
Larval tubule262 ± 124 of 4 0.50Down
Larval hindgut282 ± 174 of 4 0.56Down
Larval fat body98 ± 24 of 4 0.20Down
Larval trachea819 ± 2184 of 4 1.63None
Larval carcass281 ± 204 of 4 0.56Down
S2 cells (growing)285 ± 84 of 4 0.57Down
Whole fly502 ± 374 of 4

Looking for FBgn0038803. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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