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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038816 through 18771 annotations produced 1 hits



LRRK (Lrrk):

Annotation Number : CG5483
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038816
Gbrowse : chr3R:16461909-16469856 (+) // 100.0 //
Probeset : 1627684_at
Accessions : protein= NP_001097847;, nucleotide= NM_001104377;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0038816.
Homophila reports that CG5483 is a close match (9e-11) to human gene ACH;FGFR3 (NP_075254), a gene associated with Achondroplasia, 100800 (3);Bladder cancer, 109800 (3);CATSHL syndrome, 610474 (3);Cervical cancer, somatic, 603956 (3);Colorectal cancer, somatic, 109800 (3);Crouzon syndrome with acanthosis nigricans, 612247 (3);Hypochondroplasia, 146000 (3);LADD syndrome, 149730 (3);Muenke syndrome, 602849 (3);Nevus, keratinocytic, nonepidermolytic, 162900 (3);Thanatophoric dysplasia, types I and II, 187600 (3).
TRiP has 3 RNAi stocks for FBgn0038816 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038816 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 24 of 4 4.80Up
Head52 54 of 4 1.60Up
Eye41 54 of 4 1.29None
Thoracicoabdominal ganglion97 84 of 4 3.00Up
Salivary gland54 54 of 4 1.66Up
Crop32 14 of 4 1.00None
Midgut28 34 of 4 0.90None
Tubule30 04 of 4 0.90Down
Hindgut34 14 of 4 1.10None
Heart18 04 of 4 0.57Down
Fat body16 33 of 4 0.49Down
Ovary47 34 of 4 1.50Up
Testis17 14 of 4 0.50Down
Male accessory glands15 23 of 4 0.50Down
Virgin spermatheca9 11 of 4 0.28Down
Mated spermatheca9 13 of 4 0.30Down
Adult carcass23 24 of 4 0.70None
Larval CNS87 164 of 4 2.69Up
Larval Salivary gland35 24 of 4 1.10None
Larval midgut30 14 of 4 0.95None
Larval tubule49 14 of 4 1.50Up
Larval hindgut34 14 of 4 1.05None
Larval fat body18 24 of 4 0.60Down
Larval trachea25 54 of 4 0.78None
Larval carcass32 14 of 4 1.01None
S2 cells (growing)25 14 of 4 0.78None
Whole fly32 34 of 4

Looking for FBgn0038816. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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