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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038826 through 18771 annotations produced 2 hits



(CG17838):

Annotation Number : CG17838
Flybase ID : FBgn0038826
Gbrowse : chr3R:16615707-16631237 (+) // 100.0 //
Probeset : 1640760_at
Accessions : protein= NP_001097848; /// NP_001097849; /// NP_650913; /// NP_732555; /// NP_732556; /// NP_732557; /// NP_732558; /// NP_732559;, nucleotide= NM_001104378; /// NM_001104379; /// NM_142656; /// NM_169925; /// NM_169926; /// NM_169927; /// NM_169928; /// NM_169929;
Pathway : via spliceosome // inferred by curator"
Interpro : 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from sequence or structural similarity /// 007101
FlyMine data for FBgn0038826.
BDGP gene expression has embryonic in situ data for CG17838: 23 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0038826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain261 154 of 4 0.60Down
Head33 24 of 4 0.10Down
Eye85 74 of 4 0.20Down
Thoracicoabdominal ganglion246 164 of 4 0.60Down
Salivary gland75 124 of 4 0.18Down
Crop72 44 of 4 0.20Down
Midgut58 84 of 4 0.10Down
Tubule36 14 of 4 0.10Down
Hindgut58 54 of 4 0.10Down
Heart41 24 of 4 0.10Down
Fat body67 104 of 4 0.16Down
Ovary15 14 of 4 0.00Down
Testis3014 1454 of 4 7.20Up
Male accessory glands144 34 of 4 0.30Down
Virgin spermatheca57 34 of 4 0.14Down
Mated spermatheca55 64 of 4 0.13Down
Adult carcass75 114 of 4 0.20Down
Larval CNS418 494 of 4 1.00None
Larval Salivary gland85 74 of 4 0.20Down
Larval midgut32 64 of 4 0.08Down
Larval tubule301 284 of 4 0.70Down
Larval hindgut31 24 of 4 0.07Down
Larval fat body582 2444 of 4 1.40None
Larval trachea99 164 of 4 0.24Down
Larval carcass62 74 of 4 0.15Down
S2 cells (growing)31 14 of 4 0.07Down
Whole fly420 224 of 4



(CG17838):

Annotation Number : CG17838
Flybase ID : FBgn0038826
Gbrowse : chr3R:16582450-16631962 (+) // 100.0 //
Probeset : 1634792_s_at
Accessions : protein= NP_001097848; /// NP_001097849; /// NP_650913; /// NP_732555; /// NP_732556; /// NP_732557; /// NP_732558; /// NP_732559;, nucleotide= NM_001104378; /// NM_001104379; /// NM_142656; /// NM_169925; /// NM_169926; /// NM_169927; /// NM_169928; /// NM_169929;
Pathway : via spliceosome // inferred by curator"
Interpro : 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from sequence or structural similarity /// 007101
FlyMine data for FBgn0038826.
BDGP gene expression has embryonic in situ data for CG17838: 23 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0038826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain614 204 of 4 2.20Up
Head477 384 of 4 1.70Up
Eye338 394 of 4 1.19None
Thoracicoabdominal ganglion877 694 of 4 3.10Up
Salivary gland342 474 of 4 1.21None
Crop541 374 of 4 1.90Up
Midgut221 134 of 4 0.80Down
Tubule176 34 of 4 0.60Down
Hindgut392 184 of 4 1.40Up
Heart229 144 of 4 0.81Down
Fat body273 794 of 4 0.97None
Ovary19 21 of 4 0.10Down
Testis1136 364 of 4 4.00Up
Male accessory glands326 134 of 4 1.20None
Virgin spermatheca96 61 of 4 0.34Down
Mated spermatheca123 42 of 4 0.43Down
Adult carcass427 274 of 4 1.50Up
Larval CNS913 934 of 4 3.22Up
Larval Salivary gland479 384 of 4 1.69Up
Larval midgut128 134 of 4 0.45Down
Larval tubule1760 1164 of 4 6.20Up
Larval hindgut228 144 of 4 0.81Down
Larval fat body1761 1124 of 4 6.20Up
Larval trachea317 424 of 4 1.12None
Larval carcass544 914 of 4 1.92None
S2 cells (growing)269 44 of 4 0.95None
Whole fly283 154 of 4

Looking for FBgn0038826. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime