FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038827 through 18771 annotations produced 2 hits

Fancd2 (Fancd2):

Annotation Number : CG31192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038827
Gbrowse : chr3R:16640912-16641815 (-) // 100.0 //
Probeset : 1629311_at
Accessions : protein= NP_996246;, nucleotide= NM_206524;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from el
FlyMine data for FBgn0038827.
VDRC has 6 RNAi stocks for FBgn0038827 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	2 of 4	0.70	None
Head	6 ± 1	0 of 4	0.80	None
Eye	4 ± 0	1 of 4	0.50	None
Thoracicoabdominal ganglion	8 ± 2	2 of 4	0.90	None
Salivary gland	9 ± 4	0 of 4	1.05	None
Crop	6 ± 1	0 of 4	0.70	None
Midgut	9 ± 1	3 of 4	1.00	None
Tubule	7 ± 0	0 of 4	0.80	None
Hindgut	2 ± 0	0 of 4	0.30	Down
Heart	3 ± 0	0 of 4	0.45	Down
Fat body	8 ± 4	1 of 4	0.99	None
Ovary	12 ± 1	4 of 4	1.40	None
Testis	3 ± 0	0 of 4	0.40	Down
Male accessory glands	10 ± 3	1 of 4	1.20	None
Virgin spermatheca	6 ± 1	0 of 4	0.68	None
Mated spermatheca	6 ± 1	1 of 4	0.75	None
Adult carcass	12 ± 2	0 of 4	1.50	None
Larval CNS	6 ± 2	4 of 4	0.76	None
Larval Salivary gland	6 ± 2	1 of 4	0.78	None
Larval midgut	10 ± 2	2 of 4	1.20	None
Larval tubule	12 ± 0	1 of 4	1.50	None
Larval hindgut	6 ± 0	2 of 4	0.76	None
Larval fat body	6 ± 1	0 of 4	0.80	None
Larval trachea	6 ± 3	2 of 4	0.71	None
Larval carcass	9 ± 1	0 of 4	1.05	None
S2 cells (growing)	16 ± 0	4 of 4	1.81	Up
Whole fly	8 ± 1	3 of 4

Fancd2 (Fancd2):

Annotation Number : CG31194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038827
Gbrowse : chr3R:16636525-16640799 (-) // 100.0 //
Probeset : 1640096_at
Accessions : protein= NP_996246;, nucleotide= NM_206524;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from el
FlyMine data for FBgn0038827.
VDRC has 6 RNAi stocks for FBgn0038827 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	2 of 4	0.10	Down
Head	2 ± 0	0 of 4	0.10	Down
Eye	1 ± 0	0 of 4	0.03	Down
Thoracicoabdominal ganglion	17 ± 2	4 of 4	0.30	Down
Salivary gland	8 ± 3	0 of 4	0.17	Down
Crop	4 ± 2	0 of 4	0.10	Down
Midgut	4 ± 0	0 of 4	0.10	Down
Tubule	3 ± 0	0 of 4	0.10	Down
Hindgut	11 ± 0	2 of 4	0.20	Down
Heart	0 ± 0	0 of 4	0.01	Down
Fat body	2 ± 2	0 of 4	0.05	Down
Ovary	165 ± 1	4 of 4	3.20	Up
Testis	10 ± 0	4 of 4	0.20	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	4 ± 1	1 of 4	0.08	Down
Mated spermatheca	4 ± 0	0 of 4	0.09	Down
Adult carcass	7 ± 3	0 of 4	0.20	Down
Larval CNS	96 ± 7	4 of 4	1.89	Up
Larval Salivary gland	2 ± 1	0 of 4	0.06	Down
Larval midgut	5 ± 0	0 of 4	0.11	Down
Larval tubule	3 ± 0	0 of 4	0.10	Down
Larval hindgut	9 ± 0	3 of 4	0.19	Down
Larval fat body	7 ± 2	1 of 4	0.10	Down
Larval trachea	40 ± 4	4 of 4	0.79	None
Larval carcass	11 ± 0	3 of 4	0.22	Down
S2 cells (growing)	78 ± 2	4 of 4	1.54	Up
Whole fly	51 ± 3	4 of 4

Looking for FBgn0038827. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720