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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038828 through 18771 annotations produced 1 hits



(CG17270):

Annotation Number : CG17270
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038828
Gbrowse : chr3R:16642162-16644646 (-) // 100.0 //
Probeset : 1634218_at
Accessions : protein= NP_650915;, nucleotide= NM_142658;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0038828.
TRiP has 1 RNAi stocks for FBgn0038828 available for purchase.
VDRC has 4 RNAi stocks for FBgn0038828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain355 144 of 4 2.60Up
Head123 64 of 4 0.90None
Eye199 44 of 4 1.44Up
Thoracicoabdominal ganglion501 314 of 4 3.60Up
Salivary gland19 32 of 4 0.14Down
Crop76 14 of 4 0.60Down
Midgut78 34 of 4 0.60Down
Tubule50 24 of 4 0.40Down
Hindgut39 24 of 4 0.30Down
Heart103 54 of 4 0.75None
Fat body66 64 of 4 0.48Down
Ovary479 134 of 4 3.50Up
Testis6 04 of 4 0.10Down
Male accessory glands26 24 of 4 0.20Down
Virgin spermatheca38 34 of 4 0.28Down
Mated spermatheca55 54 of 4 0.40Down
Adult carcass51 74 of 4 0.40Down
Larval CNS216 124 of 4 1.57Up
Larval Salivary gland33 54 of 4 0.24Down
Larval midgut109 114 of 4 0.80None
Larval tubule53 44 of 4 0.40Down
Larval hindgut54 54 of 4 0.39Down
Larval fat body357 324 of 4 2.60Up
Larval trachea62 74 of 4 0.45Down
Larval carcass28 44 of 4 0.21Down
S2 cells (growing)5 02 of 4 0.04Down
Whole fly137 154 of 4

Looking for FBgn0038828. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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