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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038829 through 18771 annotations produced 1 hits



(CG17271):

Annotation Number : CG17271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038829
Gbrowse : chr3R:16645347-16647587 (-) // 100.0 //
Probeset : 1629791_at
Accessions : protein= NP_001036734; /// NP_650916;, nucleotide= NM_001043269; /// NM_142659;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0038829.
BDGP gene expression has embryonic in situ data for CG17271: 15 pix of staining in 10 body parts.
Homophila reports that CG17271 is a close match (2e-13) to human gene MCFD2 (NP_644808), a gene associated with Factor V and factor VIII, combined deficiency of, 227300 (3).
BioGrid reports that CG17271 interacts with CG3060 CG31302 CG4767 CG4771 CG4799 CG5733 CG7080 CG7274 CG9381 .
TRiP has 2 RNAi stocks for FBgn0038829 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038829 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 ± 34 of 4 0.60Down
Head329 ± 144 of 4 1.20None
Eye408 ± 214 of 4 1.44Up
Thoracicoabdominal ganglion166 ± 84 of 4 0.60Down
Salivary gland2565 ± 2184 of 4 9.07Up
Crop154 ± 84 of 4 0.50Down
Midgut75 ± 24 of 4 0.30Down
Tubule50 ± 34 of 4 0.20Down
Hindgut210 ± 24 of 4 0.70Down
Heart486 ± 254 of 4 1.72Up
Fat body1048 ± 1334 of 4 3.71Up
Ovary367 ± 44 of 4 1.30Up
Testis265 ± 154 of 4 0.90None
Male accessory glands1646 ± 514 of 4 5.80Up
Virgin spermatheca957 ± 264 of 4 3.38Up
Mated spermatheca988 ± 594 of 4 3.49Up
Adult carcass323 ± 124 of 4 1.10None
Larval CNS349 ± 384 of 4 1.23Up
Larval Salivary gland3236 ± 584 of 411.44Up
Larval midgut81 ± 54 of 4 0.29Down
Larval tubule182 ± 124 of 4 0.60Down
Larval hindgut509 ± 224 of 4 1.80Up
Larval fat body976 ± 1034 of 4 3.50Up
Larval trachea625 ± 1114 of 4 2.21Up
Larval carcass331 ± 104 of 4 1.17None
S2 cells (growing)346 ± 84 of 4 1.23Up
Whole fly282 ± 164 of 4

Looking for FBgn0038829. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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