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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038832 through 18771 annotations produced 1 hits



(CG15695):

Annotation Number : CG15695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038832
Gbrowse : chr3R:16667863-16670709 (+) // 100.0 //
Probeset : 1634503_at
Accessions : protein= NP_650920;, nucleotide= NM_142663;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0038832.
BDGP gene expression has embryonic in situ data for CG15695: 15 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0038832 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 14 of 4 0.20Down
Head88 ± 84 of 4 1.80Up
Eye9 ± 12 of 4 0.19Down
Thoracicoabdominal ganglion7 ± 00 of 4 0.10Down
Salivary gland49 ± 34 of 4 1.02None
Crop9 ± 20 of 4 0.20Down
Midgut102 ± 284 of 4 2.10None
Tubule11 ± 22 of 4 0.20Down
Hindgut31 ± 14 of 4 0.70Down
Heart152 ± 84 of 4 3.12Up
Fat body18 ± 24 of 4 0.37Down
Ovary2 ± 00 of 4 0.00Down
Testis189 ± 34 of 4 3.90Up
Male accessory glands46 ± 64 of 4 0.90None
Virgin spermatheca265 ± 44 of 4 5.40Up
Mated spermatheca365 ± 504 of 4 7.44Up
Adult carcass71 ± 54 of 4 1.50Up
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland2 ± 10 of 4 0.06Down
Larval midgut42 ± 54 of 4 0.86None
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.08Down
Larval fat body16 ± 51 of 4 0.30Down
Larval trachea12 ± 54 of 4 0.25Down
Larval carcass27 ± 54 of 4 0.56Down
S2 cells (growing)444 ± 94 of 4 9.05Up
Whole fly49 ± 54 of 4

Looking for FBgn0038832. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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