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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038838 through 18771 annotations produced 1 hits



Turandot B (TotB):

Annotation Number : CG5609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038838
Gbrowse : chr3R:16699671-16700259 (+) // 100.0 //
Probeset : 1627975_at
Accessions : protein= NP_524422;, nucleotide= NM_079698;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
FlyMine data for FBgn0038838.
BDGP gene expression has embryonic in situ data for TotB: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.60None
Head13 ± 24 of 4 2.80Up
Eye8 ± 02 of 4 1.82None
Thoracicoabdominal ganglion6 ± 22 of 4 1.30None
Salivary gland11 ± 20 of 4 2.24None
Crop5 ± 00 of 4 1.10None
Midgut4 ± 20 of 4 0.80None
Tubule3 ± 00 of 4 0.80None
Hindgut4 ± 00 of 4 0.80None
Heart8 ± 13 of 4 1.76None
Fat body16 ± 34 of 4 3.34Up
Ovary3 ± 02 of 4 0.60None
Testis8 ± 04 of 4 1.80None
Male accessory glands7 ± 00 of 4 1.60None
Virgin spermatheca24 ± 74 of 4 4.98None
Mated spermatheca21 ± 53 of 4 4.31None
Adult carcass9 ± 00 of 4 2.00Up
Larval CNS3 ± 31 of 4 0.65None
Larval Salivary gland3 ± 10 of 4 0.70None
Larval midgut4 ± 00 of 4 0.92None
Larval tubule2 ± 00 of 4 0.40None
Larval hindgut3 ± 00 of 4 0.76None
Larval fat body23 ± 43 of 4 4.90Up
Larval trachea1 ± 11 of 4 0.39None
Larval carcass3 ± 10 of 4 0.65None
S2 cells (growing)2 ± 00 of 4 0.43None
Whole fly4 ± 11 of 4

Looking for FBgn0038838. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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