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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038862 through 18771 annotations produced 1 hits



UBPY ortholog (Ubpy):

Annotation Number : CG5798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038862
Gbrowse : chr3R:16959983-16963938 (+) // 100.0 //
Probeset : 1630825_at
Accessions : protein= NP_650948;, nucleotide= NM_142691;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inf
FlyMine data for FBgn0038862.
Homophila reports that CG5798 is a close match (4e-18) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
BioGrid reports that CG5798 interacts with CG7111 CG8416 .
TRiP has 2 RNAi stocks for FBgn0038862 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038862 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 64 of 4 0.90None
Head327 ± 264 of 4 3.00Up
Eye699 ± 2874 of 4 6.32None
Thoracicoabdominal ganglion79 ± 54 of 4 0.70Down
Salivary gland65 ± 54 of 4 0.59Down
Crop65 ± 04 of 4 0.60Down
Midgut52 ± 44 of 4 0.50Down
Tubule88 ± 34 of 4 0.80Down
Hindgut52 ± 24 of 4 0.50Down
Heart38 ± 24 of 4 0.35Down
Fat body47 ± 94 of 4 0.43Down
Ovary158 ± 24 of 4 1.40Up
Testis166 ± 124 of 4 1.50Up
Male accessory glands48 ± 54 of 4 0.40Down
Virgin spermatheca45 ± 44 of 4 0.41Down
Mated spermatheca45 ± 44 of 4 0.41Down
Adult carcass30 ± 04 of 4 0.30Down
Larval CNS107 ± 94 of 4 0.97None
Larval Salivary gland54 ± 34 of 4 0.49Down
Larval midgut69 ± 34 of 4 0.63Down
Larval tubule76 ± 14 of 4 0.70Down
Larval hindgut76 ± 54 of 4 0.69Down
Larval fat body54 ± 114 of 4 0.50Down
Larval trachea86 ± 174 of 4 0.78None
Larval carcass60 ± 14 of 4 0.55Down
S2 cells (growing)88 ± 14 of 4 0.80Down
Whole fly110 ± 44 of 4

Looking for FBgn0038862. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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