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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038868 through 18771 annotations produced 1 hits



(CG5862):

Annotation Number : CG5862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038868
Gbrowse : chr3R:17040793-17041950 (+) // 100.0 //
Probeset : 1629452_at
Accessions : protein= NP_650954;, nucleotide= NM_142697;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038868.
BDGP gene expression has embryonic in situ data for CG5862: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038868 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 ± 24 of 4 0.90None
Head202 ± 114 of 4 1.20None
Eye393 ± 174 of 4 2.41Up
Thoracicoabdominal ganglion185 ± 94 of 4 1.10None
Salivary gland447 ± 264 of 4 2.75Up
Crop248 ± 154 of 4 1.50Up
Midgut357 ± 84 of 4 2.20Up
Tubule403 ± 124 of 4 2.50Up
Hindgut301 ± 104 of 4 1.80Up
Heart311 ± 84 of 4 1.92Up
Fat body336 ± 214 of 4 2.07Up
Ovary114 ± 14 of 4 0.70Down
Testis319 ± 74 of 4 2.00Up
Male accessory glands902 ± 354 of 4 5.50Up
Virgin spermatheca286 ± 124 of 4 1.76Up
Mated spermatheca269 ± 144 of 4 1.65Up
Adult carcass287 ± 114 of 4 1.80Up
Larval CNS102 ± 64 of 4 0.63Down
Larval Salivary gland806 ± 474 of 4 4.95Up
Larval midgut337 ± 14 of 4 2.07Up
Larval tubule219 ± 44 of 4 1.30Up
Larval hindgut218 ± 114 of 4 1.34Up
Larval fat body235 ± 14 of 4 1.40Up
Larval trachea169 ± 74 of 4 1.04None
Larval carcass172 ± 64 of 4 1.06None
S2 cells (growing)213 ± 54 of 4 1.31Up
Whole fly162 ± 124 of 4

Looking for FBgn0038868. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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