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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038869 through 18771 annotations produced 1 hits


Annotation Number : CG3353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038869
Gbrowse : chr3R:17042987-17044511 (-) // 100.0 //
Probeset : 1633110_at
Accessions : protein= NP_650955;, nucleotide= NM_142698;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0038869.
BDGP gene expression has embryonic in situ data for CG3353: 15 pix of staining in 5 body parts.
BioGrid reports that CG3353 interacts with CG3919 CG7172 CG7269 CG8295 .
TRiP has 1 RNAi stocks for FBgn0038869 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038869 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 14 of 4 0.70Down
Head44 14 of 4 0.50Down
Eye56 44 of 4 0.71Down
Thoracicoabdominal ganglion70 44 of 4 0.90None
Salivary gland54 44 of 4 0.67Down
Crop64 44 of 4 0.80Down
Midgut41 14 of 4 0.50Down
Tubule53 54 of 4 0.70Down
Hindgut39 24 of 4 0.50Down
Heart45 44 of 4 0.56Down
Fat body50 84 of 4 0.63Down
Ovary149 24 of 4 1.90Up
Testis62 24 of 4 0.80Down
Male accessory glands122 64 of 4 1.50Up
Virgin spermatheca56 24 of 4 0.70Down
Mated spermatheca90 44 of 4 1.12None
Adult carcass52 34 of 4 0.70Down
Larval CNS102 104 of 4 1.27Up
Larval Salivary gland72 24 of 4 0.90Down
Larval midgut44 14 of 4 0.54Down
Larval tubule31 34 of 4 0.40Down
Larval hindgut65 64 of 4 0.81None
Larval fat body33 44 of 4 0.40Down
Larval trachea136 174 of 4 1.69Up
Larval carcass78 154 of 4 0.97None
S2 cells (growing)108 24 of 4 1.35Up
Whole fly80 14 of 4

Looking for FBgn0038869. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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