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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038876 through 18771 annotations produced 1 hits



(CG5919):

Annotation Number : CG5919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038876
Gbrowse : chr3R:17095858-17097129 (+) // 100.0 //
Probeset : 1631390_at
Accessions : protein= NP_001163673; /// NP_650962;, nucleotide= NM_001170202; /// NM_142705;
Interpro : 0004452 // isopentenyl-diphosphate delta-isomerase activity // inferred from sequence or structural similarity /// 00044
FlyMine data for FBgn0038876.
BDGP gene expression has embryonic in situ data for CG5919: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038876 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 ± 24 of 4 1.30None
Head126 ± 14 of 4 1.40Up
Eye211 ± 124 of 4 2.32Up
Thoracicoabdominal ganglion115 ± 64 of 4 1.30None
Salivary gland106 ± 44 of 4 1.17None
Crop91 ± 64 of 4 1.00None
Midgut57 ± 54 of 4 0.60Down
Tubule64 ± 44 of 4 0.70Down
Hindgut119 ± 54 of 4 1.30None
Heart223 ± 64 of 4 2.45Up
Fat body197 ± 174 of 4 2.17Up
Ovary93 ± 24 of 4 1.00None
Testis54 ± 14 of 4 0.60Down
Male accessory glands64 ± 34 of 4 0.70None
Virgin spermatheca65 ± 24 of 4 0.72None
Mated spermatheca59 ± 34 of 4 0.65Down
Adult carcass189 ± 64 of 4 2.10Up
Larval CNS130 ± 64 of 4 1.43Up
Larval Salivary gland109 ± 04 of 4 1.20None
Larval midgut54 ± 34 of 4 0.60Down
Larval tubule97 ± 24 of 4 1.10None
Larval hindgut89 ± 44 of 4 0.98None
Larval fat body128 ± 74 of 4 1.40Up
Larval trachea58 ± 84 of 4 0.64Down
Larval carcass99 ± 24 of 4 1.09None
S2 cells (growing)142 ± 44 of 4 1.56Up
Whole fly91 ± 94 of 4

Looking for FBgn0038876. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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