FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038881 through 18771 annotations produced 1 hits

(CG16791):

Annotation Number : CG16791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038881
Gbrowse : chr3R:17146475-17175306 (-) // 100.0 //
Probeset : 1625033_at
Accessions : protein= NP_650967;, nucleotide= NM_142710;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0038881.
BioGrid reports that CG16791 interacts with CG31731 .
VDRC has 2 RNAi stocks for FBgn0038881 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	70 ± 4	4 of 4	2.20	Up
Head	38 ± 5	4 of 4	1.20	None
Eye	64 ± 2	4 of 4	2.00	Up
Thoracicoabdominal ganglion	67 ± 9	4 of 4	2.10	Up
Salivary gland	82 ± 6	4 of 4	2.54	Up
Crop	54 ± 3	4 of 4	1.70	Up
Midgut	89 ± 9	4 of 4	2.80	Up
Tubule	102 ± 11	4 of 4	3.20	Up
Hindgut	71 ± 1	4 of 4	2.20	Up
Heart	39 ± 2	4 of 4	1.22	None
Fat body	34 ± 2	4 of 4	1.06	None
Ovary	9 ± 1	1 of 4	0.30	Down
Testis	33 ± 0	4 of 4	1.00	None
Male accessory glands	157 ± 14	4 of 4	4.90	Up
Virgin spermatheca	48 ± 2	4 of 4	1.51	Up
Mated spermatheca	48 ± 6	4 of 4	1.49	None
Adult carcass	40 ± 1	4 of 4	1.30	Up
Larval CNS	225 ± 17	4 of 4	6.99	Up
Larval Salivary gland	172 ± 8	4 of 4	5.35	Up
Larval midgut	147 ± 25	4 of 4	4.56	Up
Larval tubule	251 ± 13	4 of 4	7.80	Up
Larval hindgut	229 ± 34	4 of 4	7.08	Up
Larval fat body	81 ± 7	4 of 4	2.50	Up
Larval trachea	90 ± 4	4 of 4	2.80	Up
Larval carcass	85 ± 4	4 of 4	2.64	Up
S2 cells (growing)	120 ± 3	4 of 4	3.73	Up
Whole fly	32 ± 1	4 of 4

Looking for FBgn0038881. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720