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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038886 through 18771 annotations produced 1 hits



(CG6475):

Annotation Number : CG6475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038886
Gbrowse : chr3R:17223587-17225544 (-) // 100.0 //
Probeset : 1623246_at
Accessions : protein= NP_001097859;, nucleotide= NM_001104389;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0038886.
Homophila reports that CG6475 is a close match (7e-59) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 2 RNAi stocks for FBgn0038886 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head4 ± 10 of 4 2.10None
Eye4 ± 20 of 4 1.91None
Thoracicoabdominal ganglion1 ± 10 of 4 0.80None
Salivary gland5 ± 20 of 4 2.25None
Crop4 ± 10 of 4 2.00None
Midgut1 ± 00 of 4 0.60None
Tubule3 ± 00 of 4 1.30None
Hindgut3 ± 10 of 4 1.50None
Heart4 ± 10 of 4 1.78None
Fat body4 ± 20 of 4 1.72None
Ovary0 ± 00 of 4 0.30None
Testis7 ± 10 of 4 3.10None
Male accessory glands5 ± 10 of 4 2.30Up
Virgin spermatheca1 ± 00 of 4 0.77None
Mated spermatheca2 ± 10 of 4 1.01None
Adult carcass9 ± 20 of 4 4.00Up
Larval CNS2 ± 00 of 4 0.97None
Larval Salivary gland4 ± 10 of 4 1.91None
Larval midgut2 ± 10 of 4 1.21None
Larval tubule515 ± 484 of 4217.10Up
Larval hindgut3 ± 00 of 4 1.58None
Larval fat body3 ± 10 of 4 1.40None
Larval trachea2 ± 00 of 4 1.08None
Larval carcass3 ± 00 of 4 1.39None
S2 cells (growing)2 ± 00 of 4 0.87None
Whole fly2 ± 00 of 4

Looking for FBgn0038886. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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