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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038903 through 18771 annotations produced 1 hits



RpI12 (RpI12):

Annotation Number : CG13418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038903
Gbrowse : chr3R:17602557-17603510 (-) // 100.0 //
Probeset : 1633328_at
Accessions : protein= NP_524439;, nucleotide= NM_079715;
Pathway : 0005736 // DNA-directed RNA polymerase I complex // inferred from sequence or structural similarity /// 0005736 // DNA-d
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activi
FlyMine data for FBgn0038903.
TRiP has 1 RNAi stocks for FBgn0038903 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 23 of 4 0.50Down
Head18 14 of 4 0.70Down
Eye16 13 of 4 0.61Down
Thoracicoabdominal ganglion16 22 of 4 0.60Down
Salivary gland57 33 of 4 2.08Up
Crop36 34 of 4 1.30None
Midgut34 13 of 4 1.20None
Tubule31 22 of 4 1.10None
Hindgut27 11 of 4 1.00None
Heart24 14 of 4 0.89None
Fat body35 113 of 4 1.30None
Ovary25 14 of 4 0.90None
Testis18 14 of 4 0.70Down
Male accessory glands58 44 of 4 2.10Up
Virgin spermatheca26 53 of 4 0.98None
Mated spermatheca41 54 of 4 1.51None
Adult carcass34 51 of 4 1.30None
Larval CNS26 34 of 4 0.96None
Larval Salivary gland40 24 of 4 1.47Up
Larval midgut31 14 of 4 1.16None
Larval tubule16 13 of 4 0.60Down
Larval hindgut32 14 of 4 1.20None
Larval fat body14 41 of 4 0.50Down
Larval trachea33 44 of 4 1.23None
Larval carcass49 53 of 4 1.81Up
S2 cells (growing)29 04 of 4 1.08None
Whole fly27 24 of 4

Looking for FBgn0038903. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime