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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038909 through 18771 annotations produced 1 hits


(CG6569):

Annotation Number : CG6569
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038909
Gbrowse : chr3R:17691891-17693825 (-) // 100.0 //
Probeset : 1639974_a_at
Accessions : protein= NP_001097864; /// NP_650988; /// NP_732669;, nucleotide= NM_001104394; /// NM_142731; /// NM_169975;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038909.
BDGP gene expression has embryonic in situ data for CG6569: 9 pix of staining in 6 body parts.
BioGrid reports that CG6569 interacts with CG8981 CG6758 CG6856 CG7417 CG7757 CG9414 CG9638 .
VDRC has 3 RNAi stocks for FBgn0038909 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head5 ± 00 of 4 0.10Down
Eye4 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland11 ± 40 of 4 0.18Down
Crop3 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule5 ± 10 of 4 0.10Down
Hindgut2 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.06Down
Fat body3 ± 10 of 4 0.06Down
Ovary3 ± 00 of 4 0.10Down
Testis1022 ± 554 of 415.20Up
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca2 ± 10 of 4 0.04Down
Adult carcass5 ± 30 of 4 0.10Down
Larval CNS6 ± 20 of 4 0.09Down
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.10Down
Larval fat body85 ± 444 of 4 1.30None
Larval trachea5 ± 40 of 4 0.08Down
Larval carcass2 ± 10 of 4 0.04Down
S2 cells (growing)7 ± 10 of 4 0.11Down
Whole fly67 ± 74 of 4

Looking for FBgn0038909. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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