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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038919 through 18771 annotations produced 1 hits



/// CG17843 (CG17843 /// DsimGD20911):

Annotation Number : CG17843
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038919
Gbrowse : chr3R:17739470-17741270 (+) // 100.0 //
Probeset : 1633584_at
Accessions : protein= NP_650998;, nucleotide= NM_142741;
Interpro : 0016491 // oxidoreductase activity // inferred from sequence or structural similarity /// 0016491 // oxidoreductase acti
FlyMine data for FBgn0038919.
TRiP has 1 RNAi stocks for FBgn0038919 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038919 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head23 ± 34 of 4 0.30Down
Eye15 ± 13 of 4 0.21Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland5 ± 31 of 4 0.07Down
Crop2 ± 10 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut4 ± 00 of 4 0.10Down
Heart2 ± 11 of 4 0.04Down
Fat body2 ± 10 of 4 0.04Down
Ovary1 ± 00 of 4 0.00Down
Testis11 ± 42 of 4 0.20Down
Male accessory glands5311 ± 914 of 472.60Up
Virgin spermatheca3 ± 00 of 4 0.05Down
Mated spermatheca7 ± 11 of 4 0.10Down
Adult carcass59 ± 44 of 4 0.80None
Larval CNS7 ± 22 of 4 0.10Down
Larval Salivary gland2 ± 00 of 4 0.04Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut53 ± 54 of 4 0.73Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea349 ± 634 of 4 4.77Up
Larval carcass141 ± 154 of 4 1.94Up
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly73 ± 54 of 4

Looking for FBgn0038919. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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