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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038921 through 18771 annotations produced 1 hits


(CG6332):

Annotation Number : CG6332
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038921
Gbrowse : chr3R:17840418-17841943 (+) // 100.0 //
Probeset : 1635129_at
Accessions : protein= NP_001138098; /// NP_650999;, nucleotide= NM_001144626; /// NM_142742;
FlyMine data for FBgn0038921.
BioGrid reports that CG6332 interacts with CG9331 .
VDRC has 2 RNAi stocks for FBgn0038921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head5 ± 20 of 4 0.00Down
Eye10 ± 11 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland25 ± 50 of 4 0.15Down
Crop15 ± 20 of 4 0.10Down
Midgut8 ± 00 of 4 0.00Down
Tubule11 ± 10 of 4 0.10Down
Hindgut9 ± 10 of 4 0.10Down
Heart7 ± 20 of 4 0.05Down
Fat body7 ± 20 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis1720 ± 54 of 410.20Up
Male accessory glands19 ± 40 of 4 0.10Down
Virgin spermatheca15 ± 10 of 4 0.09Down
Mated spermatheca14 ± 10 of 4 0.09Down
Adult carcass17 ± 50 of 4 0.10Down
Larval CNS6 ± 20 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut3 ± 10 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.02Down
Larval fat body261 ± 1313 of 4 1.50None
Larval trachea9 ± 121 of 4 0.06Down
Larval carcass5 ± 00 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly168 ± 104 of 4

Looking for FBgn0038921. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime