FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038922 through 18771 annotations produced 1 hits

Isocitrate dehydrogenase (CG6439):

Annotation Number : CG6439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038922
Gbrowse : chr3R:17842263-17845104 (-) // 100.0 //
Probeset : 1629745_at
Accessions : protein= NP_001163682; /// NP_651000;, nucleotide= NM_001170211; /// NM_142743;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred fro
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+)
FlyMine data for FBgn0038922.
BDGP gene expression has embryonic in situ data for CG6439: 11 pix of staining in 11 body parts.
BioGrid reports that CG6439 interacts with CG9933 .
TRiP has 1 RNAi stocks for FBgn0038922 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038922 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	722 ± 12	4 of 4	1.00	None
Head	639 ± 36	4 of 4	0.90	None
Eye	553 ± 40	4 of 4	0.76	Down
Thoracicoabdominal ganglion	815 ± 17	4 of 4	1.10	None
Salivary gland	1163 ± 55	4 of 4	1.59	Up
Crop	605 ± 11	4 of 4	0.80	Down
Midgut	584 ± 9	4 of 4	0.80	Down
Tubule	662 ± 11	4 of 4	0.90	Down
Hindgut	1073 ± 8	4 of 4	1.50	Up
Heart	539 ± 37	4 of 4	0.74	Down
Fat body	447 ± 21	4 of 4	0.61	Down
Ovary	418 ± 9	4 of 4	0.60	Down
Testis	806 ± 14	4 of 4	1.10	None
Male accessory glands	227 ± 13	4 of 4	0.30	Down
Virgin spermatheca	279 ± 16	4 of 4	0.38	Down
Mated spermatheca	274 ± 5	4 of 4	0.37	Down
Adult carcass	1412 ± 33	4 of 4	1.90	Up
Larval CNS	517 ± 14	4 of 4	0.71	Down
Larval Salivary gland	468 ± 23	4 of 4	0.64	Down
Larval midgut	488 ± 24	4 of 4	0.67	Down
Larval tubule	378 ± 19	4 of 4	0.50	Down
Larval hindgut	1149 ± 67	4 of 4	1.57	Up
Larval fat body	182 ± 26	4 of 4	0.20	Down
Larval trachea	215 ± 16	4 of 4	0.29	Down
Larval carcass	1251 ± 111	4 of 4	1.71	Up
S2 cells (growing)	327 ± 5	4 of 4	0.45	Down
Whole fly	731 ± 39	4 of 4

Looking for FBgn0038922. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720