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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038926 through 18771 annotations produced 1 hits



(CG13409):

Annotation Number : CG13409
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038926
Gbrowse : chr3R:17855427-17857445 (-) // 100.0 //
Probeset : 1639758_at
Accessions : protein= NP_001097866; /// NP_651004;, nucleotide= NM_001104396; /// NM_142747;
FlyMine data for FBgn0038926.
VDRC has 5 RNAi stocks for FBgn0038926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain304 ± 64 of 417.70Up
Head102 ± 54 of 4 5.90Up
Eye152 ± 114 of 4 8.85Up
Thoracicoabdominal ganglion246 ± 64 of 414.30Up
Salivary gland14 ± 10 of 4 0.87None
Crop10 ± 13 of 4 0.60Down
Midgut15 ± 13 of 4 0.90None
Tubule6 ± 00 of 4 0.40Down
Hindgut12 ± 04 of 4 0.70Down
Heart6 ± 04 of 4 0.38Down
Fat body10 ± 22 of 4 0.58Down
Ovary4 ± 00 of 4 0.20Down
Testis9 ± 04 of 4 0.60Down
Male accessory glands11 ± 12 of 4 0.70Down
Virgin spermatheca6 ± 10 of 4 0.36Down
Mated spermatheca10 ± 13 of 4 0.61Down
Adult carcass21 ± 34 of 4 1.20None
Larval CNS124 ± 154 of 4 7.24Up
Larval Salivary gland9 ± 02 of 4 0.54Down
Larval midgut9 ± 00 of 4 0.56Down
Larval tubule6 ± 00 of 4 0.40Down
Larval hindgut7 ± 12 of 4 0.43Down
Larval fat body10 ± 02 of 4 0.60Down
Larval trachea8 ± 34 of 4 0.49Down
Larval carcass9 ± 02 of 4 0.57Down
S2 cells (growing)5 ± 10 of 4 0.29Down
Whole fly17 ± 14 of 4

Looking for FBgn0038926. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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