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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038931 through 18771 annotations produced 1 hits


Annotation Number : CG13407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038931
Gbrowse : chr3R:17929135-17931312 (+) // 100.0 //
Probeset : 1627758_at
Accessions : protein= NP_651009;, nucleotide= NM_142752;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038931.
BioGrid reports that CG13407 interacts with CG14362 CG17782 CG4486 CG4780 CG5976 CG7024 CG7309 CG2158 CG32486 CG9547 .
VDRC has 2 RNAi stocks for FBgn0038931 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 2.50None
Head0 00 of 4 1.10None
Eye1 00 of 4 1.94None
Thoracicoabdominal ganglion3 10 of 4 4.90None
Salivary gland6 10 of 4 8.77Up
Crop1 00 of 4 2.00None
Midgut4 10 of 4 5.20None
Tubule1 00 of 4 2.50Up
Hindgut3 20 of 4 4.00None
Heart1 00 of 4 2.39None
Fat body2 20 of 4 3.23None
Ovary0 00 of 4 0.90None
Testis2 00 of 4 2.50None
Male accessory glands4 20 of 4 5.50None
Virgin spermatheca1 00 of 4 1.94None
Mated spermatheca2 10 of 4 3.71None
Adult carcass3 10 of 4 5.10None
Larval CNS2 20 of 4 3.26None
Larval Salivary gland2 00 of 4 2.81None
Larval midgut4 10 of 4 5.23None
Larval tubule2 10 of 4 3.60None
Larval hindgut1 00 of 4 1.42None
Larval fat body3 00 of 4 4.10None
Larval trachea0 00 of 4 1.26None
Larval carcass1 00 of 4 1.97None
S2 cells (growing)0 00 of 4 1.10None
Whole fly0 00 of 4

Looking for FBgn0038931. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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