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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038943 through 18771 annotations produced 1 hits



(CG5391):

Annotation Number : CG5391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038943
Gbrowse : chr3R:18158854-18159872 (-) // 100.0 //
Probeset : 1639532_at
Accessions : protein= NP_651021;, nucleotide= NM_142764;
FlyMine data for FBgn0038943.
BDGP gene expression has embryonic in situ data for CG5391: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0038943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 10 of 4 1.10None
Head9 ± 11 of 4 1.00None
Eye5 ± 11 of 4 0.57None
Thoracicoabdominal ganglion10 ± 12 of 4 1.20None
Salivary gland20 ± 41 of 4 2.24None
Crop24 ± 34 of 4 2.70Up
Midgut16 ± 11 of 4 1.80Up
Tubule10 ± 00 of 4 1.20Up
Hindgut22 ± 23 of 4 2.50Up
Heart5 ± 12 of 4 0.62None
Fat body11 ± 71 of 4 1.25None
Ovary7 ± 00 of 4 0.80None
Testis39 ± 24 of 4 4.50Up
Male accessory glands12 ± 51 of 4 1.40None
Virgin spermatheca9 ± 20 of 4 1.07None
Mated spermatheca14 ± 10 of 4 1.67Up
Adult carcass17 ± 31 of 4 1.90None
Larval CNS9 ± 12 of 4 1.08None
Larval Salivary gland14 ± 40 of 4 1.61None
Larval midgut10 ± 11 of 4 1.16None
Larval tubule9 ± 00 of 4 1.10None
Larval hindgut282 ± 1184 of 431.68None
Larval fat body24 ± 32 of 4 2.70Up
Larval trachea106 ± 44 of 412.00Up
Larval carcass3108 ± 7674 of 4349.32Up
S2 cells (growing)8 ± 30 of 4 0.99None
Whole fly8 ± 12 of 4

Looking for FBgn0038943. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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