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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038944 through 18771 annotations produced 1 hits



(CG5388):

Annotation Number : CG5388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038944
Gbrowse : chr3R:18162843-18166024 (-) // 100.0 //
Probeset : 1639775_at
Accessions : protein= NP_651022;, nucleotide= NM_142765;
FlyMine data for FBgn0038944.
VDRC has 3 RNAi stocks for FBgn0038944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head4 ± 20 of 4 0.10Down
Eye4 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland23 ± 22 of 4 0.44Down
Crop6 ± 10 of 4 0.10Down
Midgut11 ± 10 of 4 0.20Down
Tubule5 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart4 ± 01 of 4 0.09Down
Fat body7 ± 20 of 4 0.13Down
Ovary3 ± 00 of 4 0.10Down
Testis691 ± 254 of 412.90Up
Male accessory glands8 ± 20 of 4 0.20Down
Virgin spermatheca8 ± 01 of 4 0.15Down
Mated spermatheca11 ± 12 of 4 0.20Down
Adult carcass9 ± 10 of 4 0.20Down
Larval CNS6 ± 11 of 4 0.11Down
Larval Salivary gland5 ± 10 of 4 0.10Down
Larval midgut10 ± 10 of 4 0.20Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.09Down
Larval fat body76 ± 393 of 4 1.40None
Larval trachea4 ± 21 of 4 0.08Down
Larval carcass4 ± 00 of 4 0.08Down
S2 cells (growing)6 ± 00 of 4 0.12Down
Whole fly53 ± 14 of 4

Looking for FBgn0038944. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime