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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038952 through 18771 annotations produced 1 hits



(CG7069):

Annotation Number : CG7069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038952
Gbrowse : chr3R:18198556-18201301 (+) // 100.0 //
Probeset : 1635951_at
Accessions : protein= NP_651030;, nucleotide= NM_142773;
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred fr
FlyMine data for FBgn0038952.
Homophila reports that CG7069 is a close match (2e-105) to human gene PK1;PKLR (NP_870986), a gene associated with Pyruvate kinase deficiency, 266200 (3).
BioGrid reports that CG7069 interacts with CG8309 CG9277 .
VDRC has 3 RNAi stocks for FBgn0038952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland6 ± 21 of 4 0.20Down
Crop5 ± 10 of 4 0.20Down
Midgut2 ± 00 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut6 ± 01 of 4 0.20Down
Heart4 ± 11 of 4 0.14Down
Fat body10 ± 23 of 4 0.33Down
Ovary2 ± 00 of 4 0.10Down
Testis568 ± 244 of 417.50Up
Male accessory glands5 ± 00 of 4 0.20Down
Virgin spermatheca23 ± 14 of 4 0.72None
Mated spermatheca9 ± 13 of 4 0.28Down
Adult carcass5 ± 20 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.08Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut2 ± 10 of 4 0.07Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body28 ± 133 of 4 0.90None
Larval trachea3 ± 30 of 4 0.10Down
Larval carcass7 ± 01 of 4 0.23Down
S2 cells (growing)3 ± 10 of 4 0.12Down
Whole fly32 ± 64 of 4

Looking for FBgn0038952. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime