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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038957 through 18771 annotations produced 1 hits



(CG7059):

Annotation Number : CG7059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038957
Gbrowse : chr3R:18215501-18218071 (+) // 99.03 //
Probeset : 1624405_a_at
Accessions : protein= NP_651034; /// NP_732730; /// NP_788713;, nucleotide= NM_142777; /// NM_170008; /// NM_176536;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004619 // phosphoglycerate mutase activity //
FlyMine data for FBgn0038957.
BDGP gene expression has embryonic in situ data for CG7059: 2 pix of staining in 1 body parts.
Homophila reports that CG7059 is a close match (4e-49) to human gene BPGM (NP_954655), a gene associated with Hemolytic anemia due to bisphosphoglycerate mutase deficiency (3).
BioGrid reports that CG7059 interacts with CG8849 .
VDRC has 1 RNAi stocks for FBgn0038957 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 24 of 4 0.60Down
Head88 ± 54 of 4 0.70Down
Eye235 ± 234 of 4 1.86Up
Thoracicoabdominal ganglion61 ± 34 of 4 0.50Down
Salivary gland134 ± 104 of 4 1.07None
Crop9 ± 10 of 4 0.10Down
Midgut17 ± 11 of 4 0.10Down
Tubule952 ± 1614 of 4 7.50Up
Hindgut20 ± 12 of 4 0.20Down
Heart17 ± 44 of 4 0.14Down
Fat body24 ± 62 of 4 0.19Down
Ovary19 ± 13 of 4 0.20Down
Testis752 ± 204 of 4 5.90Up
Male accessory glands907 ± 554 of 4 7.20Up
Virgin spermatheca59 ± 64 of 4 0.47Down
Mated spermatheca60 ± 24 of 4 0.48Down
Adult carcass65 ± 114 of 4 0.50Down
Larval CNS92 ± 34 of 4 0.73Down
Larval Salivary gland163 ± 164 of 4 1.29None
Larval midgut16 ± 10 of 4 0.13Down
Larval tubule44 ± 44 of 4 0.40Down
Larval hindgut10 ± 31 of 4 0.09Down
Larval fat body90 ± 413 of 4 0.70None
Larval trachea32 ± 154 of 4 0.26Down
Larval carcass21 ± 31 of 4 0.17Down
S2 cells (growing)9 ± 10 of 4 0.08Down
Whole fly126 ± 44 of 4

Looking for FBgn0038957. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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