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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038967 through 18771 annotations produced 1 hits



(CG13847):

Annotation Number : CG13847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038967
Gbrowse : chr3R:18250933-18253963 (-) // 100.0 //
Probeset : 1626451_at
Accessions : protein= NP_651043;, nucleotide= NM_142786;
FlyMine data for FBgn0038967.
BDGP gene expression has embryonic in situ data for CG13847: 23 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0038967 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.90None
Head5 ± 10 of 4 0.90None
Eye4 ± 10 of 4 0.71None
Thoracicoabdominal ganglion7 ± 10 of 4 1.20None
Salivary gland20 ± 50 of 4 3.55None
Crop3 ± 00 of 4 0.60None
Midgut6 ± 20 of 4 1.20None
Tubule6 ± 10 of 4 1.10None
Hindgut7 ± 21 of 4 1.30None
Heart2 ± 00 of 4 0.46None
Fat body11 ± 20 of 4 1.99Up
Ovary3 ± 00 of 4 0.70None
Testis23 ± 14 of 4 4.10Up
Male accessory glands10 ± 21 of 4 1.70None
Virgin spermatheca7 ± 20 of 4 1.22None
Mated spermatheca7 ± 10 of 4 1.27None
Adult carcass8 ± 20 of 4 1.40None
Larval CNS6 ± 31 of 4 1.08None
Larval Salivary gland10 ± 20 of 4 1.73None
Larval midgut10 ± 20 of 4 1.79None
Larval tubule5 ± 10 of 4 0.90None
Larval hindgut20 ± 24 of 4 3.53Up
Larval fat body8 ± 20 of 4 1.50None
Larval trachea6 ± 20 of 4 1.06None
Larval carcass21 ± 24 of 4 3.64Up
S2 cells (growing)5 ± 10 of 4 0.88None
Whole fly5 ± 10 of 4

Looking for FBgn0038967. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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