FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038972 through 18771 annotations produced 1 hits

(CG7054):

Annotation Number : CG7054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038972
Gbrowse : chr3R:18290634-18291660 (+) // 100.0 //
Probeset : 1629546_at
Accessions : protein= NP_651050;, nucleotide= NM_142793;
Interpro : 0008429 // phosphatidylethanolamine binding // inferred from sequence or structural similarity
FlyMine data for FBgn0038972.
BDGP gene expression has embryonic in situ data for CG7054: 8 pix of staining in 1 body parts.
BioGrid reports that CG7054 interacts with CG8426 CG8068 .
VDRC has 3 RNAi stocks for FBgn0038972 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 1	4 of 4	0.10	Down
Head	172 ± 13	4 of 4	0.90	None
Eye	182 ± 12	4 of 4	0.95	None
Thoracicoabdominal ganglion	39 ± 1	4 of 4	0.20	Down
Salivary gland	508 ± 30	4 of 4	2.65	Up
Crop	362 ± 19	4 of 4	1.90	Up
Midgut	706 ± 10	4 of 4	3.70	Up
Tubule	1372 ± 13	4 of 4	7.20	Up
Hindgut	443 ± 13	4 of 4	2.30	Up
Heart	286 ± 33	4 of 4	1.50	None
Fat body	120 ± 36	4 of 4	0.63	Down
Ovary	237 ± 10	4 of 4	1.20	Up
Testis	31 ± 4	4 of 4	0.20	Down
Male accessory glands	756 ± 13	4 of 4	3.90	Up
Virgin spermatheca	137 ± 5	4 of 4	0.71	Down
Mated spermatheca	182 ± 10	4 of 4	0.95	None
Adult carcass	157 ± 17	4 of 4	0.80	None
Larval CNS	51 ± 11	4 of 4	0.27	Down
Larval Salivary gland	150 ± 8	4 of 4	0.78	Down
Larval midgut	600 ± 47	4 of 4	3.13	Up
Larval tubule	669 ± 7	4 of 4	3.50	Up
Larval hindgut	471 ± 25	4 of 4	2.45	Up
Larval fat body	43 ± 8	3 of 4	0.20	Down
Larval trachea	86 ± 18	4 of 4	0.45	Down
Larval carcass	184 ± 26	4 of 4	0.96	None
S2 cells (growing)	784 ± 10	4 of 4	4.09	Up
Whole fly	191 ± 12	4 of 4

Looking for FBgn0038972. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720