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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038973 through 18771 annotations produced 1 hits


(CG18594):

Annotation Number : CG18594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038973
Gbrowse : chr3R:18291812-18292406 (+) // 99.33 //
Probeset : 1624979_at
Accessions : protein= NP_651051;, nucleotide= NM_142794;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038973.
BDGP gene expression has embryonic in situ data for CG18594: 14 pix of staining in 2 body parts.
BioGrid reports that CG18594 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0038973 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head6 ± 20 of 4 0.00Down
Eye19 ± 81 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.00Down
Salivary gland17 ± 60 of 4 0.01Down
Crop5 ± 10 of 4 0.00Down
Midgut5977 ± 1044 of 4 3.30Up
Tubule101 ± 53 of 4 0.10Down
Hindgut236 ± 154 of 4 0.10Down
Heart16 ± 20 of 4 0.01Down
Fat body19 ± 60 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands8 ± 20 of 4 0.00Down
Virgin spermatheca15 ± 10 of 4 0.01Down
Mated spermatheca11 ± 20 of 4 0.01Down
Adult carcass21 ± 80 of 4 0.00Down
Larval CNS9 ± 60 of 4 0.00Down
Larval Salivary gland12 ± 40 of 4 0.01Down
Larval midgut5994 ± 1824 of 4 3.30Up
Larval tubule19 ± 30 of 4 0.00Down
Larval hindgut44 ± 40 of 4 0.02Down
Larval fat body12 ± 40 of 4 0.00Down
Larval trachea136 ± 2292 of 4 0.07Down
Larval carcass15 ± 20 of 4 0.01Down
S2 cells (growing)42 ± 30 of 4 0.02Down
Whole fly1816 ± 1384 of 4

Looking for FBgn0038973. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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