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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038974 through 18771 annotations produced 1 hits



(CG5377):

Annotation Number : CG5377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038974
Gbrowse : chr3R:18292626-18293849 (-) // 100.0 //
Probeset : 1637336_at
Accessions : protein= NP_651052;, nucleotide= NM_142795;
Interpro : 0017171 // serine hydrolase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0038974.
VDRC has 2 RNAi stocks for FBgn0038974 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 ± 24 of 4 1.00None
Head86 ± 74 of 4 1.20None
Eye57 ± 14 of 4 0.76Down
Thoracicoabdominal ganglion100 ± 54 of 4 1.30Up
Salivary gland100 ± 34 of 4 1.34Up
Crop63 ± 24 of 4 0.80None
Midgut90 ± 34 of 4 1.20None
Tubule117 ± 44 of 4 1.60Up
Hindgut54 ± 04 of 4 0.70Down
Heart141 ± 94 of 4 1.88Up
Fat body137 ± 104 of 4 1.84Up
Ovary89 ± 24 of 4 1.20None
Testis11 ± 03 of 4 0.20Down
Male accessory glands62 ± 44 of 4 0.80None
Virgin spermatheca115 ± 54 of 4 1.54Up
Mated spermatheca116 ± 44 of 4 1.55Up
Adult carcass126 ± 34 of 4 1.70Up
Larval CNS51 ± 64 of 4 0.69Down
Larval Salivary gland96 ± 24 of 4 1.28Up
Larval midgut69 ± 24 of 4 0.93None
Larval tubule58 ± 34 of 4 0.80None
Larval hindgut77 ± 34 of 4 1.03None
Larval fat body93 ± 124 of 4 1.20None
Larval trachea64 ± 104 of 4 0.87None
Larval carcass117 ± 84 of 4 1.57Up
S2 cells (growing)87 ± 04 of 4 1.16None
Whole fly75 ± 54 of 4

Looking for FBgn0038974. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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