FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038975 through 18771 annotations produced 1 hits

Neurexin 1 (Nrx-1):

Annotation Number : CG7050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038975
Gbrowse : chr3R:18296206-18309697 (+) // 100.0 //
Probeset : 1625623_at
Accessions : protein= NP_001163687; /// NP_524449;, nucleotide= NM_001170216; /// NM_079725;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
FlyMine data for FBgn0038975.
Homophila reports that CG7050 is a close match (4e-11) to human gene RP39;USH2A (NP_996816), a gene associated with Retinitis pigmentosa-39, 268000 (3);Usher syndrome, type 2A, 276901 (3).
TRiP has 2 RNAi stocks for FBgn0038975 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038975 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	844 ± 48	4 of 4	26.90	Up
Head	156 ± 9	4 of 4	5.00	Up
Eye	88 ± 11	4 of 4	2.81	Up
Thoracicoabdominal ganglion	693 ± 34	4 of 4	22.10	Up
Salivary gland	17 ± 5	0 of 4	0.55	None
Crop	98 ± 11	4 of 4	3.10	Up
Midgut	20 ± 1	2 of 4	0.70	Down
Tubule	7 ± 0	0 of 4	0.20	Down
Hindgut	41 ± 3	4 of 4	1.30	Up
Heart	76 ± 3	4 of 4	2.44	Up
Fat body	16 ± 6	0 of 4	0.52	Down
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	6 ± 1	1 of 4	0.20	Down
Male accessory glands	40 ± 3	4 of 4	1.30	None
Virgin spermatheca	14 ± 1	0 of 4	0.47	Down
Mated spermatheca	13 ± 4	1 of 4	0.42	Down
Adult carcass	27 ± 3	3 of 4	0.90	None
Larval CNS	203 ± 12	4 of 4	6.49	Up
Larval Salivary gland	5 ± 1	0 of 4	0.17	Down
Larval midgut	14 ± 3	2 of 4	0.45	Down
Larval tubule	7 ± 2	1 of 4	0.20	Down
Larval hindgut	24 ± 2	4 of 4	0.79	None
Larval fat body	8 ± 4	0 of 4	0.30	Down
Larval trachea	5 ± 3	0 of 4	0.18	Down
Larval carcass	8 ± 1	0 of 4	0.26	Down
S2 cells (growing)	7 ± 2	0 of 4	0.24	Down
Whole fly	31 ± 1	2 of 4

Looking for FBgn0038975. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720