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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038986 through 18771 annotations produced 1 hits



(CG5278):

Annotation Number : CG5278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038986
Gbrowse : chr3R:18384582-18388293 (-) // 100.0 //
Probeset : 1630006_at
Accessions : protein= NP_651063;, nucleotide= NM_142806;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038986.
BDGP gene expression has embryonic in situ data for CG5278: 10 pix of staining in 5 body parts.
Homophila reports that CG5278 is a close match (4e-50) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
BioGrid reports that CG5278 interacts with CG5823 .
VDRC has 2 RNAi stocks for FBgn0038986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 0.10Down
Head20 43 of 4 0.40Down
Eye2 10 of 4 0.06Down
Thoracicoabdominal ganglion8 10 of 4 0.20Down
Salivary gland59 84 of 4 1.23None
Crop20 14 of 4 0.40Down
Midgut9 20 of 4 0.20Down
Tubule4 00 of 4 0.10Down
Hindgut9 10 of 4 0.20Down
Heart3 00 of 4 0.07Down
Fat body12 21 of 4 0.24Down
Ovary7 00 of 4 0.20Down
Testis5 11 of 4 0.10Down
Male accessory glands300 154 of 4 6.20Up
Virgin spermatheca13 23 of 4 0.29Down
Mated spermatheca12 11 of 4 0.25Down
Adult carcass12 10 of 4 0.20Down
Larval CNS6 11 of 4 0.14Down
Larval Salivary gland5 00 of 4 0.10Down
Larval midgut7 10 of 4 0.16Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut19 34 of 4 0.40Down
Larval fat body8 20 of 4 0.20Down
Larval trachea7 50 of 4 0.15Down
Larval carcass195 624 of 4 4.00None
S2 cells (growing)6 10 of 4 0.13Down
Whole fly48 44 of 4

Looking for FBgn0038986. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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