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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039002 through 18771 annotations produced 1 hits



(CG17625):

Annotation Number : CG17625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039002
Gbrowse : chr3R:18512625-18513054 (+) // 100.0 //
Probeset : 1628925_at
Accessions : protein= NP_651078;, nucleotide= NM_142821;
FlyMine data for FBgn0039002.
VDRC has 1 RNAi stocks for FBgn0039002 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.20Down
Head4 ± 00 of 4 0.20Down
Eye7 ± 21 of 4 0.32Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland17 ± 61 of 4 0.70None
Crop3 ± 00 of 4 0.10Down
Midgut5 ± 10 of 4 0.20Down
Tubule5 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.20Down
Heart4 ± 00 of 4 0.17Down
Fat body6 ± 10 of 4 0.27Down
Ovary4 ± 12 of 4 0.20Down
Testis315 ± 54 of 412.60Up
Male accessory glands8 ± 20 of 4 0.40Down
Virgin spermatheca6 ± 10 of 4 0.27Down
Mated spermatheca8 ± 00 of 4 0.32Down
Adult carcass7 ± 10 of 4 0.30Down
Larval CNS4 ± 12 of 4 0.19Down
Larval Salivary gland6 ± 20 of 4 0.26Down
Larval midgut4 ± 11 of 4 0.18Down
Larval tubule4 ± 00 of 4 0.20Down
Larval hindgut4 ± 00 of 4 0.19Down
Larval fat body53 ± 243 of 4 2.20None
Larval trachea6 ± 31 of 4 0.28Down
Larval carcass8 ± 00 of 4 0.33Down
S2 cells (growing)2 ± 00 of 4 0.11Down
Whole fly25 ± 24 of 4

Looking for FBgn0039002. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime