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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039008 through 18771 annotations produced 1 hits



(CG6972):

Annotation Number : CG6972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039008
Gbrowse : chr3R:18527728-18530061 (+) // 100.0 //
Probeset : 1640332_at
Accessions : protein= NP_651084;, nucleotide= NM_142827;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039008.
BDGP gene expression has embryonic in situ data for CG6972: 14 pix of staining in 4 body parts.
BioGrid reports that CG6972 interacts with CG7046 CG7937 .
VDRC has 4 RNAi stocks for FBgn0039008 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 20 of 4 0.10Down
Head78 64 of 4 1.30None
Eye19 33 of 4 0.32Down
Thoracicoabdominal ganglion6 20 of 4 0.10Down
Salivary gland9 40 of 4 0.16Down
Crop590 114 of 4 9.90Up
Midgut52 34 of 4 0.90None
Tubule5 10 of 4 0.10Down
Hindgut121 44 of 4 2.00Up
Heart80 84 of 4 1.35None
Fat body12 10 of 4 0.20Down
Ovary1 00 of 4 0.00Down
Testis19 34 of 4 0.30Down
Male accessory glands35 23 of 4 0.60Down
Virgin spermatheca9 11 of 4 0.15Down
Mated spermatheca18 23 of 4 0.31Down
Adult carcass186 74 of 4 3.10Up
Larval CNS5 02 of 4 0.09Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut34 23 of 4 0.57Down
Larval tubule4 20 of 4 0.10Down
Larval hindgut58 54 of 4 0.98None
Larval fat body3 20 of 4 0.10Down
Larval trachea10 31 of 4 0.18Down
Larval carcass343 324 of 4 5.74Up
S2 cells (growing)0 00 of 4 0.01Down
Whole fly59 14 of 4

Looking for FBgn0039008. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime