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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039010 through 18771 annotations produced 1 hits


(CG4907):

Annotation Number : CG4907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039010
Gbrowse : chr3R:18533507-18536485 (-) // 100.0 //
Probeset : 1638734_at
Accessions : protein= NP_651086;, nucleotide= NM_142829;
Pathway : 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred fro
FlyMine data for FBgn0039010.
BDGP gene expression has embryonic in situ data for CG4907: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0039010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.10Down
Eye4 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland11 ± 30 of 4 0.18Down
Crop5 ± 10 of 4 0.10Down
Midgut7 ± 10 of 4 0.10Down
Tubule7 ± 11 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.05Down
Fat body5 ± 30 of 4 0.09Down
Ovary1 ± 00 of 4 0.00Down
Testis960 ± 124 of 415.40Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass9 ± 30 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 10 of 4 0.07Down
Larval midgut7 ± 10 of 4 0.12Down
Larval tubule9 ± 01 of 4 0.20Down
Larval hindgut4 ± 00 of 4 0.07Down
Larval fat body126 ± 714 of 4 2.00None
Larval trachea4 ± 51 of 4 0.07Down
Larval carcass4 ± 00 of 4 0.08Down
S2 cells (growing)6 ± 01 of 4 0.10Down
Whole fly62 ± 114 of 4

Looking for FBgn0039010. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime