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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039022 through 18771 annotations produced 1 hits



(CG4725):

Annotation Number : CG4725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039022
Gbrowse : chr3R:18584567-18586793 (-) // 100.0 //
Probeset : 1640956_at
Accessions : protein= NP_651096;, nucleotide= NM_142839;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0039022.
Homophila reports that CG4725 is a close match (7e-16) to human gene KEL (NP_000411), a gene associated with [Blood group, Kell] (3).
VDRC has 2 RNAi stocks for FBgn0039022 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 01 of 4 0.20Down
Head121 ± 74 of 4 3.90Up
Eye51 ± 84 of 4 1.63None
Thoracicoabdominal ganglion7 ± 00 of 4 0.20Down
Salivary gland20 ± 32 of 4 0.64Down
Crop5 ± 30 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut10 ± 30 of 4 0.30Down
Heart109 ± 74 of 4 3.51Up
Fat body330 ± 464 of 410.59Up
Ovary2 ± 00 of 4 0.10Down
Testis4 ± 10 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca479 ± 254 of 415.35Up
Mated spermatheca349 ± 584 of 411.20Up
Adult carcass145 ± 124 of 4 4.70Up
Larval CNS2 ± 10 of 4 0.08Down
Larval Salivary gland12 ± 20 of 4 0.39Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule4 ± 00 of 4 0.20Down
Larval hindgut16 ± 33 of 4 0.51Down
Larval fat body544 ± 494 of 417.40Up
Larval trachea4 ± 31 of 4 0.13Down
Larval carcass9 ± 10 of 4 0.31Down
S2 cells (growing)3 ± 10 of 4 0.11Down
Whole fly31 ± 24 of 4

Looking for FBgn0039022. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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