Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039026 through 18771 annotations produced 1 hits



(CG7029):

Annotation Number : CG7029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039026
Gbrowse : chr3R:18610205-18618491 (+) // 100.0 //
Probeset : 1638893_at
Accessions : protein= NP_001097879; /// NP_001097880; /// NP_001097881; /// NP_788719;, nucleotide= NM_001104409; /// NM_001104410; /// NM_001104411; /// NM_176542;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inf
FlyMine data for FBgn0039026.
VDRC has 3 RNAi stocks for FBgn0039026 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 ± 34 of 4 5.60Up
Head42 ± 74 of 4 1.80None
Eye86 ± 154 of 4 3.75Up
Thoracicoabdominal ganglion70 ± 64 of 4 3.10Up
Salivary gland53 ± 103 of 4 2.33Up
Crop32 ± 34 of 4 1.40None
Midgut25 ± 23 of 4 1.10None
Tubule30 ± 23 of 4 1.30Up
Hindgut52 ± 24 of 4 2.30Up
Heart70 ± 84 of 4 3.09Up
Fat body10 ± 61 of 4 0.46None
Ovary15 ± 14 of 4 0.70None
Testis11 ± 11 of 4 0.50None
Male accessory glands29 ± 30 of 4 1.30None
Virgin spermatheca2 ± 00 of 4 0.08Down
Mated spermatheca2 ± 00 of 4 0.09Down
Adult carcass29 ± 34 of 4 1.30None
Larval CNS41 ± 114 of 4 1.79None
Larval Salivary gland13 ± 22 of 4 0.58None
Larval midgut36 ± 44 of 4 1.58None
Larval tubule68 ± 34 of 4 3.00Up
Larval hindgut30 ± 04 of 4 1.31None
Larval fat body24 ± 13 of 4 1.00None
Larval trachea74 ± 144 of 4 3.23Up
Larval carcass19 ± 41 of 4 0.85None
S2 cells (growing)71 ± 04 of 4 3.12Up
Whole fly23 ± 54 of 4

Looking for FBgn0039026. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime