FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039027 through 18771 annotations produced 1 hits

(CG7031):

Annotation Number : CG7031
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039027
Gbrowse : chr3R:18630012-18632211 (+) // 100.0 //
Probeset : 1623524_at
Accessions : protein= NP_651101;, nucleotide= NM_142844;
FlyMine data for FBgn0039027.
BDGP gene expression has embryonic in situ data for CG7031: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0039027 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.10	None
Head	7 ± 1	0 of 4	1.50	None
Eye	1 ± 0	0 of 4	0.39	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.30	None
Salivary gland	2 ± 1	0 of 4	0.48	None
Crop	6 ± 1	0 of 4	1.20	None
Midgut	2 ± 0	0 of 4	0.60	None
Tubule	2 ± 0	0 of 4	0.60	Down
Hindgut	5 ± 2	0 of 4	1.20	None
Heart	1 ± 0	0 of 4	0.24	None
Fat body	2 ± 0	0 of 4	0.58	None
Ovary	4 ± 2	0 of 4	0.90	None
Testis	2 ± 1	0 of 4	0.60	None
Male accessory glands	2 ± 0	0 of 4	0.50	None
Virgin spermatheca	5 ± 0	0 of 4	1.16	None
Mated spermatheca	2 ± 0	0 of 4	0.54	None
Adult carcass	8 ± 2	0 of 4	1.70	None
Larval CNS	1 ± 0	0 of 4	0.24	None
Larval Salivary gland	5 ± 1	0 of 4	1.12	None
Larval midgut	1 ± 0	0 of 4	0.26	None
Larval tubule	2 ± 0	0 of 4	0.50	None
Larval hindgut	4 ± 1	0 of 4	0.94	None
Larval fat body	4 ± 2	0 of 4	0.80	None
Larval trachea	2 ± 2	0 of 4	0.42	None
Larval carcass	8 ± 0	0 of 4	1.61	None
S2 cells (growing)	4 ± 1	0 of 4	0.99	None
Whole fly	5 ± 2	0 of 4

Looking for FBgn0039027. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720