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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039031 through 18771 annotations produced 1 hits



(CG17244):

Annotation Number : CG17244
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039031
Gbrowse : chr3R:18802992-18803613 (+) // 100.0 //
Probeset : 1625837_at
Accessions : protein= NP_651105;, nucleotide= NM_142848;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039031.
BDGP gene expression has embryonic in situ data for CG17244: 8 pix of staining in 1 body parts.
BioGrid reports that CG17244 interacts with CG4079 CG9293 .
VDRC has 1 RNAi stocks for FBgn0039031 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 34 of 4 0.10Down
Head1144 ± 454 of 4 3.90Up
Eye389 ± 874 of 4 1.34None
Thoracicoabdominal ganglion31 ± 24 of 4 0.10Down
Salivary gland17 ± 10 of 4 0.06Down
Crop27 ± 34 of 4 0.10Down
Midgut14 ± 12 of 4 0.10Down
Tubule20 ± 42 of 4 0.10Down
Hindgut91 ± 84 of 4 0.30Down
Heart883 ± 454 of 4 3.03Up
Fat body2392 ± 1124 of 4 8.20Up
Ovary2 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands8 ± 30 of 4 0.00Down
Virgin spermatheca2353 ± 484 of 4 8.07Up
Mated spermatheca1782 ± 624 of 4 6.11Up
Adult carcass1369 ± 534 of 4 4.70Up
Larval CNS4 ± 20 of 4 0.02Down
Larval Salivary gland126 ± 154 of 4 0.43Down
Larval midgut20 ± 31 of 4 0.07Down
Larval tubule63 ± 64 of 4 0.20Down
Larval hindgut129 ± 274 of 4 0.44Down
Larval fat body4026 ± 4064 of 413.80Up
Larval trachea50 ± 314 of 4 0.17Down
Larval carcass47 ± 114 of 4 0.16Down
S2 cells (growing)5 ± 10 of 4 0.02Down
Whole fly291 ± 194 of 4

Looking for FBgn0039031. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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