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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039033 through 18771 annotations produced 1 hits



Odorant receptor 94a (Or94a):

Annotation Number : CG17241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039033
Gbrowse : chr3R:18813002-18814225 (+) // 100.0 //
Probeset : 1637134_at
Accessions : protein= NP_524455;, nucleotide= NM_079731;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0039033.
VDRC has 3 RNAi stocks for FBgn0039033 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.60Down
Head6 ± 10 of 4 0.60Down
Eye1 ± 00 of 4 0.18Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.80None
Salivary gland15 ± 40 of 4 1.67None
Crop8 ± 20 of 4 0.90None
Midgut18 ± 30 of 4 2.00None
Tubule7 ± 00 of 4 0.80Down
Hindgut62 ± 34 of 4 6.50Up
Heart2 ± 10 of 4 0.27Down
Fat body11 ± 10 of 4 1.21None
Ovary4 ± 10 of 4 0.40Down
Testis11 ± 04 of 4 1.30Up
Male accessory glands12 ± 30 of 4 1.30None
Virgin spermatheca6 ± 20 of 4 0.64None
Mated spermatheca6 ± 10 of 4 0.69None
Adult carcass12 ± 30 of 4 1.40None
Larval CNS3 ± 20 of 4 0.39Down
Larval Salivary gland10 ± 20 of 4 1.07None
Larval midgut11 ± 10 of 4 1.19None
Larval tubule13 ± 20 of 4 1.40None
Larval hindgut9 ± 20 of 4 0.94None
Larval fat body16 ± 20 of 4 1.70Up
Larval trachea4 ± 30 of 4 0.46None
Larval carcass11 ± 00 of 4 1.16None
S2 cells (growing)4 ± 10 of 4 0.49None
Whole fly9 ± 00 of 4

Looking for FBgn0039033. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime