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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039041 through 18771 annotations produced 1 hits


(CG13838):

Annotation Number : CG13838
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039041
Gbrowse : chr3R:18867962-18868392 (+) // 100.0 //
Probeset : 1636128_at
Accessions : protein= NP_651112;, nucleotide= NM_142855;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039041.
BioGrid reports that CG13838 interacts with CG14071 CG4767 CG8310 CG15468 CG17107 CG17841 CG17870 CG18041 CG18731 CG2286 CG30011 CG31175 CG31324 CG32030 CG3217 CG3810 CG5057 CG5085 CG5199 CG7435 CG8309 CG8824 CG9418 CG33094 Dmel CR31808 CG7274 .
VDRC has 3 RNAi stocks for FBgn0039041 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 00 of 4 0.05Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis778 ± 224 of 411.90Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body38 ± 173 of 4 0.60None
Larval trachea1 ± 10 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly65 ± 74 of 4

Looking for FBgn0039041. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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