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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039044 through 18771 annotations produced 2 hits



p53-like regulator of apoptosis and cell cycle (p53):

Annotation Number : CG31325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039044
Gbrowse : chr3R:18879299-18879805 (-) // 100.0 //
Probeset : 1630028_at
Accessions : protein= NP_001163694; /// NP_996267; /// NP_996268;, nucleotide= NM_001170223; /// NM_206544; /// NM_206545;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : signal transduction resulting in induction of apoptosis // traceable author statement /// 0009314 // response to radiat
FlyMine data for FBgn0039044.
BDGP gene expression has embryonic in situ data for p53: 14 pix of staining in 4 body parts.
TRiP has 4 RNAi stocks for FBgn0039044 available for purchase.
VDRC has 5 RNAi stocks for FBgn0039044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head0 00 of 4 0.20None
Eye0 00 of 4 0.19None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland3 20 of 4 1.34None
Crop0 00 of 4 0.30None
Midgut1 00 of 4 0.70None
Tubule1 00 of 4 0.80Down
Hindgut1 00 of 4 0.70None
Heart0 00 of 4 0.37None
Fat body0 00 of 4 0.40None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.40None
Male accessory glands0 00 of 4 0.30None
Virgin spermatheca1 10 of 4 0.84None
Mated spermatheca1 00 of 4 0.77None
Adult carcass3 10 of 4 1.40None
Larval CNS0 00 of 4 0.13None
Larval Salivary gland1 00 of 4 0.59None
Larval midgut2 00 of 4 1.04None
Larval tubule2 00 of 4 1.20None
Larval hindgut0 00 of 4 0.37None
Larval fat body2 10 of 4 1.20None
Larval trachea0 00 of 4 0.23None
Larval carcass1 00 of 4 0.52None
S2 cells (growing)6 01 of 4 2.77Up
Whole fly2 10 of 4



p53-like regulator of apoptosis and cell cycle (p53):

Annotation Number : CG10873
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039044
Gbrowse : chr3R:18875372-18879211 (-) // 100.0 //
Probeset : 1625134_at
Accessions : protein= NP_001163694; /// NP_996267; /// NP_996268;, nucleotide= NM_001170223; /// NM_206544; /// NM_206545;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : signal transduction resulting in induction of apoptosis // traceable author statement /// 0009314 // response to radiat
FlyMine data for FBgn0039044.
BDGP gene expression has embryonic in situ data for p53: 14 pix of staining in 4 body parts.
TRiP has 4 RNAi stocks for FBgn0039044 available for purchase.
VDRC has 5 RNAi stocks for FBgn0039044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 24 of 4 0.80None
Head64 44 of 4 0.60Down
Eye54 24 of 4 0.49Down
Thoracicoabdominal ganglion74 24 of 4 0.70Down
Salivary gland113 74 of 4 1.02None
Crop103 34 of 4 0.90None
Midgut163 54 of 4 1.50Up
Tubule279 214 of 4 2.50Up
Hindgut159 34 of 4 1.40Up
Heart56 54 of 4 0.51Down
Fat body79 94 of 4 0.71Down
Ovary191 34 of 4 1.70Up
Testis61 24 of 4 0.60Down
Male accessory glands114 64 of 4 1.00None
Virgin spermatheca82 34 of 4 0.74Down
Mated spermatheca95 44 of 4 0.86None
Adult carcass74 74 of 4 0.70Down
Larval CNS103 54 of 4 0.93None
Larval Salivary gland85 74 of 4 0.77None
Larval midgut92 44 of 4 0.83None
Larval tubule106 44 of 4 1.00None
Larval hindgut68 34 of 4 0.61Down
Larval fat body62 44 of 4 0.60Down
Larval trachea97 44 of 4 0.88None
Larval carcass63 34 of 4 0.57Down
S2 cells (growing)367 164 of 4 3.31Up
Whole fly111 84 of 4

Looking for FBgn0039044. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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