FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039045 through 18771 annotations produced 2 hits

(CG17119):

Annotation Number : CG17119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039045
Gbrowse : chr3R:18880131-18883268 (-) // 100.0 //
Probeset : 1640630_at
Accessions : protein= NP_651116; /// NP_788720;, nucleotide= NM_142859; /// NM_176543;
Pathway : 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // non-traceable author sta
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015184
FlyMine data for FBgn0039045.
BDGP gene expression has embryonic in situ data for CG17119: 25 pix of staining in 6 body parts.
Homophila reports that CG17119 is a close match (6e-70) to human gene CTNS (NP_004928), a gene associated with Cystinosis, atypical nephropathic (3);Cystinosis, late-onset juvenile or adolescent nephropathic, 219900 (3);Cystinosis, nephropathic, 219800 (3);Cystinosis, ocular nonnephropathic, 219750 (3).
TRiP has 1 RNAi stocks for FBgn0039045 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039045 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.90	None
Head	3 ± 1	0 of 4	1.00	None
Eye	4 ± 1	0 of 4	1.36	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	1.00	None
Salivary gland	24 ± 7	0 of 4	8.00	None
Crop	7 ± 3	0 of 4	2.30	None
Midgut	28 ± 3	4 of 4	9.30	Up
Tubule	37 ± 3	4 of 4	12.10	Up
Hindgut	24 ± 1	4 of 4	7.90	Up
Heart	3 ± 1	0 of 4	1.16	None
Fat body	3 ± 2	0 of 4	1.02	None
Ovary	3 ± 0	0 of 4	1.00	None
Testis	4 ± 1	1 of 4	1.60	None
Male accessory glands	1 ± 0	0 of 4	0.50	None
Virgin spermatheca	0 ± 0	0 of 4	0.24	None
Mated spermatheca	2 ± 1	0 of 4	0.79	None
Adult carcass	4 ± 1	0 of 4	1.30	None
Larval CNS	2 ± 2	0 of 4	0.69	None
Larval Salivary gland	15 ± 2	1 of 4	5.05	Up
Larval midgut	20 ± 3	3 of 4	6.73	Up
Larval tubule	9 ± 1	1 of 4	3.10	Up
Larval hindgut	8 ± 2	1 of 4	2.86	None
Larval fat body	5 ± 3	0 of 4	1.70	None
Larval trachea	4 ± 2	0 of 4	1.41	None
Larval carcass	2 ± 1	0 of 4	0.83	None
S2 cells (growing)	13 ± 1	3 of 4	4.49	Up
Whole fly	3 ± 1	0 of 4

(CG17119):

Annotation Number : CG17119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039045
Gbrowse : chr3R:18880131-18883268 (-) // 100.0 //
Probeset : 1634186_a_at
Accessions : protein= NP_651116; /// NP_788720;, nucleotide= NM_142859; /// NM_176543;
Pathway : 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // non-traceable author sta
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015184
FlyMine data for FBgn0039045.
BDGP gene expression has embryonic in situ data for CG17119: 25 pix of staining in 6 body parts.
Homophila reports that CG17119 is a close match (6e-70) to human gene CTNS (NP_004928), a gene associated with Cystinosis, atypical nephropathic (3);Cystinosis, late-onset juvenile or adolescent nephropathic, 219900 (3);Cystinosis, nephropathic, 219800 (3);Cystinosis, ocular nonnephropathic, 219750 (3).
TRiP has 1 RNAi stocks for FBgn0039045 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039045 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	23 ± 0	4 of 4	0.10	Down
Head	48 ± 4	4 of 4	0.30	Down
Eye	27 ± 0	4 of 4	0.15	Down
Thoracicoabdominal ganglion	23 ± 2	4 of 4	0.10	Down
Salivary gland	298 ± 7	4 of 4	1.61	Up
Crop	61 ± 1	4 of 4	0.30	Down
Midgut	1321 ± 40	4 of 4	7.10	Up
Tubule	1294 ± 44	4 of 4	7.00	Up
Hindgut	971 ± 43	4 of 4	5.30	Up
Heart	18 ± 2	4 of 4	0.10	Down
Fat body	20 ± 6	4 of 4	0.11	Down
Ovary	40 ± 2	4 of 4	0.20	Down
Testis	130 ± 4	4 of 4	0.70	Down
Male accessory glands	17 ± 2	2 of 4	0.10	Down
Virgin spermatheca	27 ± 1	4 of 4	0.15	Down
Mated spermatheca	22 ± 1	4 of 4	0.12	Down
Adult carcass	58 ± 3	4 of 4	0.30	Down
Larval CNS	46 ± 13	4 of 4	0.25	Down
Larval Salivary gland	429 ± 21	4 of 4	2.32	Up
Larval midgut	1476 ± 136	4 of 4	7.98	Up
Larval tubule	444 ± 13	4 of 4	2.40	Up
Larval hindgut	831 ± 90	4 of 4	4.49	Up
Larval fat body	23 ± 2	4 of 4	0.10	Down
Larval trachea	62 ± 10	4 of 4	0.34	Down
Larval carcass	52 ± 6	4 of 4	0.28	Down
S2 cells (growing)	568 ± 11	4 of 4	3.07	Up
Whole fly	185 ± 13	4 of 4

Looking for FBgn0039045. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720