FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039049 through 18771 annotations produced 1 hits

(CG6726):

Annotation Number : CG6726
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039049
Gbrowse : chr3R:18917448-18919186 (+) // 100.0 //
Probeset : 1623849_s_at
Accessions : protein= NP_651120; /// NP_732822;, nucleotide= NM_142863; /// NM_170048;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004046 // aminoacylase activity // inferred from electronic annotation /// 0004046 // aminoacylase activity // non-trac
FlyMine data for FBgn0039049.
BDGP gene expression has embryonic in situ data for CG6726: 25 pix of staining in 4 body parts.
Homophila reports that CG6726 is a close match (8e-106) to human gene ACY1;ACY1D (NP_000657), a gene associated with Aminoacylase 1 deficiency, 609924 (3).
BioGrid reports that CG6726 interacts with CG7264 .
TRiP has 1 RNAi stocks for FBgn0039049 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039049 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 1	4 of 4	0.00	Down
Head	55 ± 2	4 of 4	0.10	Down
Eye	55 ± 1	4 of 4	0.10	Down
Thoracicoabdominal ganglion	37 ± 1	4 of 4	0.10	Down
Salivary gland	87 ± 7	4 of 4	0.15	Down
Crop	53 ± 4	4 of 4	0.10	Down
Midgut	105 ± 6	4 of 4	0.20	Down
Tubule	8244 ± 185	4 of 4	14.10	Up
Hindgut	669 ± 50	4 of 4	1.10	None
Heart	67 ± 12	4 of 4	0.12	Down
Fat body	84 ± 60	4 of 4	0.14	Down
Ovary	111 ± 2	4 of 4	0.20	Down
Testis	9 ± 1	1 of 4	0.00	Down
Male accessory glands	123 ± 7	4 of 4	0.20	Down
Virgin spermatheca	72 ± 5	4 of 4	0.12	Down
Mated spermatheca	60 ± 2	4 of 4	0.10	Down
Adult carcass	61 ± 3	4 of 4	0.10	Down
Larval CNS	109 ± 12	4 of 4	0.19	Down
Larval Salivary gland	246 ± 4	4 of 4	0.42	Down
Larval midgut	467 ± 24	4 of 4	0.80	Down
Larval tubule	6396 ± 164	4 of 4	10.90	Up
Larval hindgut	317 ± 7	4 of 4	0.54	Down
Larval fat body	586 ± 93	4 of 4	1.00	None
Larval trachea	103 ± 9	4 of 4	0.18	Down
Larval carcass	228 ± 26	4 of 4	0.39	Down
S2 cells (growing)	118 ± 9	4 of 4	0.20	Down
Whole fly	585 ± 37	4 of 4

Looking for FBgn0039049. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720