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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039059 through 18771 annotations produced 1 hits



(CG13829):

Annotation Number : CG13829
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039059
Gbrowse : chr3R:18986352-18987040 (-) // 100.0 //
Probeset : 1623814_at
Accessions : protein= NP_651129;, nucleotide= NM_142872;
FlyMine data for FBgn0039059.
VDRC has 3 RNAi stocks for FBgn0039059 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head2 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland8 ± 50 of 4 0.29Down
Crop6 ± 10 of 4 0.20Down
Midgut10 ± 12 of 4 0.30Down
Tubule8 ± 00 of 4 0.30Down
Hindgut6 ± 11 of 4 0.20Down
Heart3 ± 10 of 4 0.12Down
Fat body9 ± 20 of 4 0.30Down
Ovary3 ± 10 of 4 0.10Down
Testis374 ± 204 of 412.50Up
Male accessory glands8 ± 10 of 4 0.30Down
Virgin spermatheca5 ± 00 of 4 0.19Down
Mated spermatheca2 ± 10 of 4 0.09Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.05Down
Larval Salivary gland2 ± 00 of 4 0.08Down
Larval midgut7 ± 10 of 4 0.26Down
Larval tubule7 ± 21 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.09Down
Larval fat body65 ± 303 of 4 2.20None
Larval trachea7 ± 42 of 4 0.26Down
Larval carcass2 ± 10 of 4 0.09Down
S2 cells (growing)10 ± 13 of 4 0.36Down
Whole fly29 ± 14 of 4

Looking for FBgn0039059. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime