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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039064 through 18771 annotations produced 1 hits



(CG4467):

Annotation Number : CG4467
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039064
Gbrowse : chr3R:19055782-19065771 (-) // 100.0 //
Probeset : 1631676_at
Accessions : protein= NP_001036747; /// NP_651133;, nucleotide= NM_001043282; /// NM_142876;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0039064.
VDRC has 3 RNAi stocks for FBgn0039064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain638 ± 344 of 437.90Up
Head62 ± 134 of 4 3.70Up
Eye134 ± 184 of 4 8.02Up
Thoracicoabdominal ganglion369 ± 694 of 421.90Up
Salivary gland24 ± 21 of 4 1.43None
Crop10 ± 11 of 4 0.60None
Midgut6 ± 10 of 4 0.40Down
Tubule7 ± 10 of 4 0.40Down
Hindgut9 ± 13 of 4 0.60Down
Heart6 ± 00 of 4 0.36Down
Fat body16 ± 53 of 4 0.96None
Ovary5 ± 00 of 4 0.30Down
Testis5 ± 00 of 4 0.40Down
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca14 ± 23 of 4 0.86None
Mated spermatheca17 ± 53 of 4 1.04None
Adult carcass6 ± 11 of 4 0.40Down
Larval CNS106 ± 244 of 4 6.33Up
Larval Salivary gland4 ± 11 of 4 0.25Down
Larval midgut6 ± 20 of 4 0.38Down
Larval tubule5 ± 01 of 4 0.30Down
Larval hindgut4 ± 21 of 4 0.29Down
Larval fat body8 ± 11 of 4 0.50Down
Larval trachea8 ± 42 of 4 0.52Down
Larval carcass7 ± 10 of 4 0.44Down
S2 cells (growing)2 ± 00 of 4 0.16Down
Whole fly16 ± 23 of 4

Looking for FBgn0039064. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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