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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039065 through 18771 annotations produced 1 hits



(CG4449):

Annotation Number : CG4449
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039065
Gbrowse : chr3R:19075164-19077199 (-) // 100.0 //
Probeset : 1623040_at
Accessions : protein= NP_001163698; /// NP_651134;, nucleotide= NM_001170227; /// NM_142877;
FlyMine data for FBgn0039065.
VDRC has 3 RNAi stocks for FBgn0039065 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain267 ± 54 of 4 1.20Up
Head93 ± 44 of 4 0.40Down
Eye147 ± 84 of 4 0.66Down
Thoracicoabdominal ganglion230 ± 44 of 4 1.00None
Salivary gland42 ± 84 of 4 0.19Down
Crop48 ± 34 of 4 0.20Down
Midgut32 ± 14 of 4 0.10Down
Tubule69 ± 34 of 4 0.30Down
Hindgut28 ± 14 of 4 0.10Down
Heart30 ± 24 of 4 0.14Down
Fat body20 ± 44 of 4 0.09Down
Ovary458 ± 84 of 4 2.00Up
Testis525 ± 114 of 4 2.30Up
Male accessory glands35 ± 14 of 4 0.20Down
Virgin spermatheca17 ± 24 of 4 0.08Down
Mated spermatheca20 ± 04 of 4 0.09Down
Adult carcass30 ± 24 of 4 0.10Down
Larval CNS287 ± 164 of 4 1.28Up
Larval Salivary gland48 ± 14 of 4 0.21Down
Larval midgut37 ± 24 of 4 0.17Down
Larval tubule64 ± 34 of 4 0.30Down
Larval hindgut39 ± 24 of 4 0.18Down
Larval fat body111 ± 424 of 4 0.50None
Larval trachea67 ± 154 of 4 0.30Down
Larval carcass48 ± 34 of 4 0.21Down
S2 cells (growing)87 ± 54 of 4 0.39Down
Whole fly224 ± 74 of 4

Looking for FBgn0039065. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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