FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039066 through 18771 annotations produced 1 hits

Elongin A (EloA):

Annotation Number : CG6755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039066
Gbrowse : chr3R:19077265-19080804 (+) // 100.0 //
Probeset : 1632158_a_at
Accessions : protein= NP_651135; /// NP_732846;, nucleotide= NM_142878; /// NM_170061;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006368 // RNA elongation from RNA polymerase II promoter // i
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0008023 // transcription elongation factor complex // infe
FlyMine data for FBgn0039066.
BDGP gene expression has embryonic in situ data for CG6755: 39 pix of staining in 10 body parts.
BioGrid reports that CG6755 interacts with CG7524 CG9291 .
TRiP has 1 RNAi stocks for FBgn0039066 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039066 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	137 ± 4	4 of 4	1.00	None
Head	59 ± 3	4 of 4	0.40	Down
Eye	79 ± 2	4 of 4	0.57	Down
Thoracicoabdominal ganglion	122 ± 6	4 of 4	0.90	None
Salivary gland	121 ± 4	4 of 4	0.88	None
Crop	80 ± 3	4 of 4	0.60	Down
Midgut	67 ± 1	4 of 4	0.50	Down
Tubule	70 ± 6	4 of 4	0.50	Down
Hindgut	65 ± 1	4 of 4	0.50	Down
Heart	77 ± 3	4 of 4	0.57	Down
Fat body	79 ± 6	4 of 4	0.58	Down
Ovary	347 ± 9	4 of 4	2.50	Up
Testis	94 ± 4	4 of 4	0.70	Down
Male accessory glands	62 ± 3	4 of 4	0.50	Down
Virgin spermatheca	53 ± 3	4 of 4	0.39	Down
Mated spermatheca	56 ± 3	4 of 4	0.41	Down
Adult carcass	74 ± 4	4 of 4	0.50	Down
Larval CNS	142 ± 3	4 of 4	1.03	None
Larval Salivary gland	133 ± 8	4 of 4	0.97	None
Larval midgut	81 ± 2	4 of 4	0.59	Down
Larval tubule	88 ± 1	4 of 4	0.60	Down
Larval hindgut	89 ± 1	4 of 4	0.65	Down
Larval fat body	95 ± 10	4 of 4	0.70	Down
Larval trachea	94 ± 6	4 of 4	0.68	Down
Larval carcass	91 ± 4	4 of 4	0.66	Down
S2 cells (growing)	135 ± 1	4 of 4	0.98	None
Whole fly	137 ± 5	4 of 4

Looking for FBgn0039066. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720