FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039078 through 18771 annotations produced 2 hits

():

Annotation Number : Stencil:3R:19292330:19287254:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:19296597-19301673 (-) // 100.0 //
Probeset : 1641577_at
Accessions : protein= , nucleotide=

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	2.00	Up
Head	4 ± 1	0 of 4	1.40	None
Eye	3 ± 1	0 of 4	1.16	None
Thoracicoabdominal ganglion	7 ± 1	0 of 4	2.30	Up
Salivary gland	13 ± 5	0 of 4	4.49	None
Crop	9 ± 1	0 of 4	3.00	Up
Midgut	7 ± 0	0 of 4	2.40	Up
Tubule	7 ± 0	0 of 4	2.40	Up
Hindgut	8 ± 1	0 of 4	2.90	Up
Heart	2 ± 1	0 of 4	0.93	None
Fat body	5 ± 3	0 of 4	1.89	None
Ovary	3 ± 1	0 of 4	1.00	None
Testis	3 ± 0	0 of 4	1.30	None
Male accessory glands	10 ± 4	0 of 4	3.50	None
Virgin spermatheca	6 ± 1	0 of 4	2.18	None
Mated spermatheca	8 ± 1	0 of 4	2.80	Up
Adult carcass	13 ± 1	0 of 4	4.40	Up
Larval CNS	5 ± 3	0 of 4	1.67	None
Larval Salivary gland	3 ± 0	0 of 4	1.15	None
Larval midgut	7 ± 0	0 of 4	2.44	Up
Larval tubule	6 ± 1	1 of 4	2.20	Up
Larval hindgut	7 ± 2	0 of 4	2.54	None
Larval fat body	9 ± 3	0 of 4	3.00	None
Larval trachea	5 ± 3	1 of 4	1.81	None
Larval carcass	12 ± 3	0 of 4	4.17	None
S2 cells (growing)	3 ± 0	0 of 4	1.21	None
Whole fly	3 ± 0	0 of 4

(CG4374):

Annotation Number : CG4374
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039078
Gbrowse : chr3R:19233976-19238329 (-) // 100.0 //
Probeset : 1634183_at
Accessions : protein= NP_651146;, nucleotide= NM_142889;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0039078.
Homophila reports that CG4374 is a close match (1e-12) to human gene MRX92;ZNF674 (NP_001034980), a gene associated with Mental retardation, X-linked-92 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	2.50	None
Head	2 ± 0	0 of 4	1.60	None
Eye	2 ± 0	0 of 4	1.46	None
Thoracicoabdominal ganglion	7 ± 0	0 of 4	4.40	Up
Salivary gland	16 ± 6	0 of 4	10.32	None
Crop	7 ± 2	1 of 4	4.60	None
Midgut	8 ± 1	0 of 4	5.30	Up
Tubule	4 ± 0	0 of 4	2.80	Up
Hindgut	6 ± 2	0 of 4	4.40	None
Heart	2 ± 0	0 of 4	1.40	None
Fat body	7 ± 3	0 of 4	4.83	Up
Ovary	4 ± 0	0 of 4	3.00	Up
Testis	3 ± 1	0 of 4	2.30	None
Male accessory glands	5 ± 0	0 of 4	3.20	Up
Virgin spermatheca	2 ± 1	0 of 4	1.56	None
Mated spermatheca	4 ± 1	0 of 4	2.54	None
Adult carcass	4 ± 1	0 of 4	2.50	None
Larval CNS	2 ± 1	0 of 4	1.38	None
Larval Salivary gland	5 ± 2	0 of 4	3.59	None
Larval midgut	7 ± 1	0 of 4	4.75	Up
Larval tubule	7 ± 1	1 of 4	4.50	Up
Larval hindgut	7 ± 0	0 of 4	4.57	Up
Larval fat body	6 ± 1	0 of 4	3.90	None
Larval trachea	4 ± 3	0 of 4	2.78	None
Larval carcass	5 ± 1	0 of 4	3.40	None
S2 cells (growing)	1 ± 1	0 of 4	1.11	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0039078. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720